View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_low_6 (Length: 455)
Name: NF1832_low_6
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 51303307 - 51303635
Alignment:
| Q |
15 |
caacttccatctacattaaaaatagcacctgaaaaattgttattgttccatctaatgtacctgttagttgtaacttgtaacagcaaaagcagaaggagaa |
114 |
Q |
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| T |
51303307 |
caacttccatccacattaagaatagcacctgaaaaattgttatctttccatctgatgtacctgttagttgtaac-------agcaaaagaagaaggagaa |
51303399 |
T |
|
| Q |
115 |
taactaattacaatgctttcaatcgaattttttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgc |
214 |
Q |
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| T |
51303400 |
aggctgattacaatgctttcaatcaaattttt-atgttacaagtcagacgatgtaaagaccaagattcaccacccaaacacataagattctgatgt-cgc |
51303497 |
T |
|
| Q |
215 |
caagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatcaagat |
313 |
Q |
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| T |
51303498 |
caagatcaccaaactccgacagaaaaagtgatagcatgggaacccttagttccccctttaagccactcgtaagcatcaatagaagagaagaattcaggat |
51303597 |
T |
|
| Q |
314 |
tggtgaaacctaagtggtgccataacattgcggagaaa |
351 |
Q |
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| T |
51303598 |
tagtgaaacctaagtggtgccataacatagcagagaaa |
51303635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 5204277 - 5204528
Alignment:
| Q |
15 |
caacttccatctacattaaaaatagcacctgaaaaattgttattgtt-ccatctaatgtacctgttagttgtaacttgtaacagcaaaagcagaaggaga |
113 |
Q |
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| T |
5204277 |
caacttccatccacattaagaatagcacctgaaaaattgttattatttccatctaatgtacctgttagttgtaaa-------agcagaagcagaaggtga |
5204369 |
T |
|
| Q |
114 |
ataactaattacaatgctttcaatcgaattttttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcg |
213 |
Q |
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| T |
5204370 |
atagttgattacaatgctttcaatcgaatttttgatcttacaagccaggcgatgtaaagaccaagtttcaccacccaaacacataaggtttcgatg-tcg |
5204468 |
T |
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| Q |
214 |
ccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttccccttt |
273 |
Q |
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| T |
5204469 |
ccaagaccaccaaactccgacataaaaagtgatagcatgggaacccttagttcccccttt |
5204528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 339
Target Start/End: Complemental strand, 9536347 - 9536153
Alignment:
| Q |
145 |
tttatgttacatgccaggcgatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtg |
244 |
Q |
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| T |
9536347 |
tttatgttacaagacaggcgatgcaaagaccaagtttcaccacccatacacataagattttgatg-tcgccaagaccaccaaactccaacagagaaagtg |
9536249 |
T |
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| Q |
245 |
atagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatcaagattggtgaaacctaagtggtgccataac |
339 |
Q |
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| T |
9536248 |
atagcctaagaacccttagctccctttctaagccattcgtaaacatcaatagaagaaaaagaatccgcattagtgaaacctaagtggttccataac |
9536153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 38224225 - 38224149
Alignment:
| Q |
172 |
gaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtgatagc |
249 |
Q |
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| T |
38224225 |
gaccaagtttcaccactcaaacacataaaatttcgatgct-gccaagaccaccacactccaacagaaaaagtggtagc |
38224149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 38224374 - 38224309
Alignment:
| Q |
16 |
aacttccatctacattaaaaatagcacctgaaaaattgttattgttccatctaatgtacctgttag |
81 |
Q |
| |
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| T |
38224374 |
aactaccatccacattaagaatagcacccgaaatattattattattccatctgatgtacctgttag |
38224309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 38945566 - 38945495
Alignment:
| Q |
15 |
caacttccatctacattaaaaatagcacctgaaaaattgttattgttccatctaatgtacctgttagttgta |
86 |
Q |
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| T |
38945566 |
caactaccatccacattaagaatagcacctgaaatattattattattccatctgacgtacttgttagctgta |
38945495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 10470425 - 10470491
Alignment:
| Q |
22 |
catctacattaaaaatagcacctgaaaaattgttattgttccatctaatgtacctgttagttgtaac |
88 |
Q |
| |
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| T |
10470425 |
catccacattaagaataacacttgtaaaattattattgttccatctgatgtacctgtcagtcgtaac |
10470491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 92 - 428
Target Start/End: Original strand, 35061526 - 35061863
Alignment:
| Q |
92 |
taacagcaaaagcagaaggagaataa-ctaattacaatgctttcaatcgaattttttatgttacatgccaggcgatgtaaagaccaagtttcaccaacca |
190 |
Q |
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|||||| | |||||||||||| | || || ||||||| ||| ||||| ||||||||| ||||||| | | ||| |||| ||||||||||||||| ||| |
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| T |
35061526 |
taacagtagaagcagaaggaggaaaagcttattacaaagctctcaatagaattttttctgttacaagtctagcgttgtagggaccaagtttcaccaccca |
35061625 |
T |
|
| Q |
191 |
aacacataaggttccgatgttcgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccactg-taagcat |
289 |
Q |
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| T |
35061626 |
aacacataagattttgatgc-cgccaagaccaccaaactcccacagaaaaagtgttagcctgagaacccttagctcccctcctaagccaatcataagcat |
35061724 |
T |
|
| Q |
290 |
cagtagaagagaagaaatcaagattggtgaaacctaagtggtgccataacattgcggagaaagtaaagtcacgaacacaatgtataaaggtctcatttta |
389 |
Q |
| |
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| || ||||||| |||||| |||| ||||||||||||||||||||||||| | |||||||||| ||||| |||||||||| | |||||| || || | |
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| T |
35061725 |
ccataaaagagaaaaaatcatgattagtgaaacctaagtggtgccataacaaagtggagaaagtacagtcatgaacacaatggagaaaggtatcgttctg |
35061824 |
T |
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| Q |
390 |
aagaccgcagcgagagcaagtagccgaaggagctaaatt |
428 |
Q |
| |
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| T |
35061825 |
gagacggcaacgagagcaagtagcagaaggagctaaatt |
35061863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 25121573 - 25121634
Alignment:
| Q |
164 |
gatgtaaagaccaagtttcaccaaccaaacacataaggttccgatgttcgccaagaccaccaaac |
228 |
Q |
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| T |
25121573 |
gatgtaaagaccaagtttcaccactcaaacacat--gattccgatg-acgccaagaccaccaaac |
25121634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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