View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1832_low_9 (Length: 394)

Name: NF1832_low_9
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1832_low_9
NF1832_low_9
[»] chr4 (4 HSPs)
chr4 (14-207)||(55331017-55331210)
chr4 (259-375)||(55330849-55330965)
chr4 (108-210)||(55336449-55336551)
chr4 (259-378)||(55336284-55336403)
[»] chr2 (15 HSPs)
chr2 (5-208)||(8395289-8395492)
chr2 (5-208)||(8406080-8406283)
chr2 (263-378)||(8395535-8395650)
chr2 (263-378)||(8405922-8406037)
chr2 (271-378)||(8431178-8431285)
chr2 (107-208)||(8439297-8439398)
chr2 (263-378)||(8375852-8375967)
chr2 (263-378)||(8439136-8439251)
chr2 (133-195)||(8368479-8368541)
chr2 (133-195)||(8400869-8400931)
chr2 (110-156)||(8404185-8404231)
chr2 (133-195)||(8422446-8422508)
chr2 (107-208)||(8375705-8375806)
chr2 (107-208)||(8412200-8412301)
chr2 (107-208)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 55331210 - 55331017
Alignment:
Q  14 agaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331210 agaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggaga 55331111  T
Q  114 aagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331110 aagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 55331017  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 55330965 - 55330849
Alignment:
Q  259 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55330965 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaat 55330866  T
Q  359 atagcattaaaggttaa 375  Q
    |||||||||||||||||    
T  55330865 atagcattaaaggttaa 55330849  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 55336551 - 55336449
Alignment:
Q  108 tggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 207  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  55336551 tggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaaccttctgtttggtggcc 55336452  T
Q  208 tgc 210  Q
    |||    
T  55336451 tgc 55336449  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 259 - 378
Target Start/End: Complemental strand, 55336403 - 55336284
Alignment:
Q  259 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat 358  Q
    |||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||| || |  ||||| |||||||| ||||| ||||||||||||    
T  55336403 tagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaat 55336304  T
Q  359 atagcattaaaggttaacaa 378  Q
    |||||||| ||| |||||||    
T  55336303 atagcattgaagattaacaa 55336284  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 8395289 - 8395492
Alignment:
Q  5 gaggagcagagaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtt 104  Q
    ||||| || ||||| ||||||||||| |||||||| |||| |||| | ||  |||  ||| | |||||||||||||  |  ||  ||||||| ||| ||     
T  8395289 gaggaacaaagaaatgctacaagattgttcaaacaacttcaaagcaatattcaaactacaatagctcttggaaatcctagtgaggaagatgttaagggtg 8395388  T
Q  105 tcatggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtg 204  Q
      ||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |  |||||||||||||  |||||||||| | | ||||||  ||||||    
T  8395389 caatggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtg 8395488  T
Q  205 gcct 208  Q
    ||||    
T  8395489 gcct 8395492  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 8406283 - 8406080
Alignment:
Q  5 gaggagcagagaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtt 104  Q
    ||||| || ||||| ||||||||||| |||||||| |||| |||| | ||  |||  ||| | |||||||||||||  |  ||  ||||||| ||| ||     
T  8406283 gaggaacaaagaaatgctacaagattgttcaaacaacttcaaagcaatattcaaactacaatagctcttggaaatcctagtgaggaagatgttaagggtg 8406184  T
Q  105 tcatggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtg 204  Q
      ||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |  |||||||||||||  |||||||||| | | ||||||  ||||||    
T  8406183 caatggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtg 8406084  T
Q  205 gcct 208  Q
    ||||    
T  8406083 gcct 8406080  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 378
Target Start/End: Original strand, 8395535 - 8395650
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || |||   |||||   |||||||||||| ||||||||||| ||||    
T  8395535 aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag 8395634  T
Q  363 cattaaaggttaacaa 378  Q
    | || ||||| |||||    
T  8395635 ctttgaaggtaaacaa 8395650  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 8406037 - 8405922
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || |||   |||||   |||||||||||| ||||||||||| ||||    
T  8406037 aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag 8405938  T
Q  363 cattaaaggttaacaa 378  Q
    | || ||||| |||||    
T  8405937 ctttgaaggtaaacaa 8405922  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 378
Target Start/End: Complemental strand, 8431285 - 8431178
Alignment:
Q  271 atggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaag 370  Q
    ||||||||| |||||||||| |||| |||| || ||| |||||||  | || |  |||||  ||||||||||||| ||||||||||| |||||||| |||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  371 gttaacaa 378  Q
    || |||||    
T  8431185 gtaaacaa 8431178  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8439398 - 8439297
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || |||||||||||||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8439398 atggaaaaggttttggcacttgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8439299  T
Q  207 ct 208  Q
    ||    
T  8439298 ct 8439297  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 378
Target Start/End: Original strand, 8375852 - 8375967
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    |||||||| |||||| | ||||| |||| |||| |||| |||||| |||||||  | || |  |||||   |||||||||||| ||||||||||| ||||    
T  8375852 aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag 8375951  T
Q  363 cattaaaggttaacaa 378  Q
    |||| ||||| |||||    
T  8375952 cattgaaggtaaacaa 8375967  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 8439251 - 8439136
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    |||||||| |||||| | ||||| |||| |||| |||| |||||| |||||||  | || |  |||||   |||||||||||| ||||||||||| ||||    
T  8439251 aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag 8439152  T
Q  363 cattaaaggttaacaa 378  Q
    |||| ||||| |||||    
T  8439151 cattgaaggtaaacaa 8439136  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 8368541 - 8368479
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8368541 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8368479  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 8400869 - 8400931
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8400869 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8400931  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 8404231 - 8404185
Alignment:
Q  110 gagaaagttttggcacttgacaaagcttatccacttcctttattagg 156  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  8404231 gagaaggttttggctcttgataaagcctatccacttcctttattagg 8404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 8422446 - 8422508
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8422446 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8422508  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 8375705 - 8375806
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8375705 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8375804  T
Q  207 ct 208  Q
    ||    
T  8375805 ct 8375806  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8412301 - 8412200
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8412301 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8412202  T
Q  207 ct 208  Q
    ||    
T  8412201 ct 8412200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8434399 - 8434298
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8434399 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8434300  T
Q  207 ct 208  Q
    ||    
T  8434299 ct 8434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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