View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_high_12 (Length: 370)
Name: NF18330_high_12
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 23992446 - 23992787
Alignment:
| Q |
19 |
acctgggcccgcaaaccacaaaccttggcccattaacaatagttatatatagcatcgatagagttgcatgcgttagggtttttctgtttcagatttgagt |
118 |
Q |
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| T |
23992446 |
acctgggcccgcaaaccacaaaccttggcccattaacaatagttatatatagcatcgatagagttgcatgcgttagggtttttctgtttcagatttgagt |
23992545 |
T |
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| Q |
119 |
tcacattgatagagttgcatgagttagggtttattcaacttcaacacactatactataatggatattcctccaactaagaaacgacgatgtcgatcaggg |
218 |
Q |
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| T |
23992546 |
tcacattgatagagttgcatgagttagggtttattcaacttcaacacactatactataatggatattcctccaactaagaaacgacgatgtcgatcaggg |
23992645 |
T |
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| Q |
219 |
agatctattgcaccgtatccaaccttgttcctcccggatgaactcatcatagaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcc |
318 |
Q |
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| T |
23992646 |
agatctattgcaccgtatccaaccttgttcctcccggatgaactcatcatagaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcc |
23992745 |
T |
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| Q |
319 |
tgagcaagtcatggttcactatcatatccgatccaacctttg |
360 |
Q |
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| T |
23992746 |
tgagcaagtcatggttcactatcatatccgatccaacctttg |
23992787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 11346066 - 11345978
Alignment:
| Q |
270 |
gaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctt |
358 |
Q |
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| T |
11346066 |
gaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccaccctt |
11345978 |
T |
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