View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_high_14 (Length: 329)
Name: NF18330_high_14
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4067978 - 4068288
Alignment:
| Q |
1 |
tggaaagcaggagctaagttgagatcaagcggtgaagaatcagcggcggcgtcacggtcacggcttgaggattcaacggtgctgctttggctagggctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067978 |
tggaaagcaggagctaagttgagatcaagcggtgaagaatcagcggcggcgtcacggtcacggcttgaggattcaacggtgctgctttggctagggctat |
4068077 |
T |
|
| Q |
101 |
ggatcttaatattttctacagggaaagggaagtttgttttcgcctttggacctcggaattgacgtgcggcggagtcgtaagctcttgctgcttcctccgc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4068078 |
ggatcttaatattttctatagggaaagggaagtttgttttcgcctttggacctcggaattgacgtgcggcggagtcgtaagctcttgctgcttcctccgc |
4068177 |
T |
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| Q |
201 |
cgtgtcgaaagttccgagccaaacgcggctcttctttcctggatctcttatctccgcggcgtatcttccccatggtctctttcttactcctctaaaatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4068178 |
cgtgtcgaaagttccgagccaaacgcggctcttctttcctggatctcttatctccgcggcgtatcttccccatggtctctttcttactcctctaaaatgc |
4068277 |
T |
|
| Q |
301 |
gcctccttaac |
311 |
Q |
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||||||||||| |
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| T |
4068278 |
gcctccttaac |
4068288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 30412801 - 30412962
Alignment:
| Q |
126 |
agggaagtttgttttcgcctttggacctcggaattgacgtgcggcggagtcgtaagctcttgctgcttcctccgccgtgtcgaaagttccgagccaaacg |
225 |
Q |
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| T |
30412801 |
agggaagttggttttggcttttgggccacggaactgacgagcggcgttgtcgtaagctctggcagcttcttcggcggtgtcaaaggtacctagccagacg |
30412900 |
T |
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| Q |
226 |
cggctcttctttcctggatctcttatctccgcggcgtatcttccccatggtctctttcttac |
287 |
Q |
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| T |
30412901 |
cggcttttcttaccgggatcgcgaatctcggcggcgtaacggccccatggtcgctttcttac |
30412962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 30412745 - 30412775
Alignment:
| Q |
70 |
gattcaacggtgctgctttggctagggctat |
100 |
Q |
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| T |
30412745 |
gattcaacggtgctgctttggctagggctat |
30412775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 38862448 - 38862395
Alignment:
| Q |
243 |
atctcttatctccgcggcgtatcttccccatggtctctttcttactcctctaaa |
296 |
Q |
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| T |
38862448 |
atctcttatctccgcggcaaattttccccatggcctagttcttactcctctaaa |
38862395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 43490149 - 43490202
Alignment:
| Q |
240 |
tggatctcttatctccgcggcgtatcttccccatggtctctttcttactcctct |
293 |
Q |
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| T |
43490149 |
tggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct |
43490202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 21358890 - 21358862
Alignment:
| Q |
196 |
tccgccgtgtcgaaagttccgagccaaac |
224 |
Q |
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| T |
21358890 |
tccgccgtgtcgaaagttccgagccaaac |
21358862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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