View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18330_high_17 (Length: 294)

Name: NF18330_high_17
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18330_high_17
NF18330_high_17
[»] chr6 (41 HSPs)
chr6 (19-294)||(27602902-27603165)
chr6 (19-156)||(27216303-27216440)
chr6 (30-156)||(26657820-26657946)
chr6 (30-156)||(26763791-26763917)
chr6 (21-156)||(26885918-26886053)
chr6 (19-153)||(26625075-26625209)
chr6 (19-153)||(26731052-26731186)
chr6 (19-153)||(26863445-26863579)
chr6 (19-152)||(26648285-26648418)
chr6 (19-152)||(26754253-26754386)
chr6 (19-156)||(26813342-26813479)
chr6 (44-156)||(25491522-25491634)
chr6 (44-156)||(26637413-26637524)
chr6 (44-156)||(26743379-26743490)
chr6 (21-151)||(26938890-26939020)
chr6 (36-156)||(26960923-26961040)
chr6 (20-156)||(27609318-27609454)
chr6 (20-156)||(27696787-27696923)
chr6 (21-156)||(31286401-31286536)
chr6 (35-156)||(26144702-26144823)
chr6 (30-156)||(27425817-27425943)
chr6 (30-156)||(27680810-27680936)
chr6 (30-156)||(27716707-27716833)
chr6 (19-152)||(26825668-26825801)
chr6 (36-156)||(25546815-25546935)
chr6 (20-156)||(26804315-26804451)
chr6 (29-156)||(25484893-25485020)
chr6 (101-156)||(27663477-27663532)
chr6 (35-156)||(25512724-25512845)
chr6 (235-294)||(27609532-27609590)
chr6 (235-294)||(27680674-27680732)
chr6 (235-294)||(27704675-27704733)
chr6 (36-92)||(25581620-25581676)
chr6 (235-294)||(27591427-27591485)
chr6 (235-294)||(27697001-27697059)
chr6 (235-294)||(28787965-28788023)
chr6 (235-294)||(28794086-28794144)
chr6 (42-80)||(26850582-26850620)
chr6 (171-223)||(25512661-25512713)
chr6 (238-294)||(27676029-27676084)
chr6 (242-294)||(27716918-27716969)
[»] chr4 (8 HSPs)
chr4 (31-156)||(18653750-18653875)
chr4 (31-156)||(18677832-18677957)
chr4 (31-156)||(18697674-18697799)
chr4 (31-156)||(18687886-18688011)
chr4 (31-156)||(18722346-18722471)
chr4 (31-156)||(18729768-18729893)
chr4 (30-155)||(18075613-18075738)
chr4 (21-93)||(5089252-5089324)
[»] chr1 (4 HSPs)
chr1 (27-156)||(28125886-28126015)
chr1 (19-156)||(266552-266689)
chr1 (44-156)||(28131722-28131834)
chr1 (235-294)||(266761-266819)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-156)||(61420-61546)
[»] chr8 (2 HSPs)
chr8 (235-294)||(29272250-29272308)
chr8 (21-88)||(16353079-16353146)
[»] chr2 (1 HSPs)
chr2 (31-84)||(17991420-17991473)
[»] scaffold1870 (1 HSPs)
scaffold1870 (235-294)||(493-551)
[»] scaffold0277 (2 HSPs)
scaffold0277 (235-294)||(3115-3173)
scaffold0277 (235-294)||(12078-12136)
[»] scaffold0419 (1 HSPs)
scaffold0419 (238-294)||(9211-9266)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 27602902 - 27603165
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  27602902 tagaaaactgaccattttcaatgataagtgttttgagatttgtcatcttcttcatggcctttccattccactctattacgttttccattgagggacaatt 27603001  T
Q  119 caaatatatcatttcaatgttcctagttcccttttaacnnnnnnnnnnnnncagaataaaccacaatataaataatatatcgaataatatgcatgtaatt 218  Q
    ||||| |||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||            |||||||||    
T  27603002 caaatgtatcatttcaatgttcctagttcccttttaagaaaaataaaacaacagaataaaccacaatataaataatata------------catgtaatt 27603089  T
Q  219 aagtgnnnnnnnntagtagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||        || ||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||    
T  27603090 aagtggaaaaaaataatagtatgagatgatcatatttagtccaaaaagaccaaaagtcatattaaaactaaataac 27603165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 27216440 - 27216303
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| || ||||||||||| |||| ||| ||||||||| |||| ||| ||||||||||||||  ||||| |||||| ||||||| ||||||||| ||    
T  27216440 tagaaaaatggccattttcaatgataaatgttttgagatttttcatcttcgtgaaggcctttccactccactttattacattttccactgagggacactt 27216341  T
Q  119 caaatatatcatttcaatgttcctagttcccttttaac 156  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  27216340 caaatatatcatttcaattttccaagttcccttttaac 27216303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 26657946 - 26657820
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||||| ||||| || |||||||||||||| ||| |||||| |||||||| ||| ||||||| | ||||||| ||||||||||||| ||||||||    
T  26657946 ccattttcaatgataagagttttgagatttgtcatcttcctgaagggctttccattccagtctattatggtttccatcgagggacaattcagatatatca 26657847  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    |||||||||| || |||||||||||||    
T  26657846 tttcaatgttactggttcccttttaac 26657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 26763917 - 26763791
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||||| ||||| || |||||||||||||| ||| |||||| |||||||| ||| ||||||| | ||||||| ||||||||||||| ||||||||    
T  26763917 ccattttcaatgataagagttttgagatttgtcatcttcctgaagggctttccattccagtctattatggtttccatcgagggacaattcagatatatca 26763818  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    |||||||||| || |||||||||||||    
T  26763817 tttcaatgttactggttcccttttaac 26763791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 26886053 - 26885918
Alignment:
Q  21 gaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattca 120  Q
    ||||| || ||||||||||| ||||| || ||||| |||||||| |||||||||| ||||||||  || |||||||||  |||||||| |||||| ||||    
T  26886053 gaaaaatggccattttcaatgataagagttttgagttttgtcatcttcttgaaggactttccattacagtctattacgggttccattgcgggacagttca 26885954  T
Q  121 aatatatcatttcaatgttcctagttcccttttaac 156  Q
     |||||||||||||||||| ||||||||||||||||    
T  26885953 gatatatcatttcaatgttgctagttcccttttaac 26885918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 26625209 - 26625075
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    |||||||| |||||| |||||| |||||||| ||||| |||||||| ||| ||||||||||||| | |   |||||||||  |||||| |||||| ||||    
T  26625209 tagaaaaccgaccatcttcaatgataagtgttttgagttttgtcatcttcctgaaggcctttcctttctggtctattacggattccatagagggaaaatt 26625110  T
Q  119 caaatatatcatttcaatgttcctagttccctttt 153  Q
    || ||||||||||||||| || |||||||||||||    
T  26625109 catatatatcatttcaattttactagttccctttt 26625075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 26731186 - 26731052
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    |||||||| |||||| |||||| |||||||| ||||| |||||||| ||| ||||||||||||| | |   |||||||||  |||||| |||||| ||||    
T  26731186 tagaaaaccgaccatcttcaatgataagtgttttgagttttgtcatcttcctgaaggcctttcctttctggtctattacggattccatagagggaaaatt 26731087  T
Q  119 caaatatatcatttcaatgttcctagttccctttt 153  Q
    || ||||||||||||||| || |||||||||||||    
T  26731086 catatatatcatttcaattttactagttccctttt 26731052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 26863579 - 26863445
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| || ||||||||||| | |||||| ||||| ||| |||| ||||||||||||||||||| ||| |||||||||  |||| |||| |||||||     
T  26863579 tagaaaaatggccattttcaatgacaagtgttttgagttttttcatcttcttgaaggcctttccattccagtctattacgggttccgttgaaggacaatg 26863480  T
Q  119 caaatatatcatttcaatgttcctagttccctttt 153  Q
    || ||||| ||||||||| || |||||||||||||    
T  26863479 cagatataccatttcaattttactagttccctttt 26863445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 26648418 - 26648285
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| | |   |||||||||  |||||| ||| |  ||||    
T  26648418 tagaaaaatgaccattttcaatgataagtgttttgagttttgtcatcttcttgaaggcctttcctttctggtctattacggattccatggagtggaaatt 26648319  T
Q  119 caaatatatcatttcaatgttcctagttcccttt 152  Q
    || ||||||||||||||| || ||||||||||||    
T  26648318 catatatatcatttcaattttactagttcccttt 26648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 26754386 - 26754253
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| | |   |||||||||  |||||| ||| |  ||||    
T  26754386 tagaaaaatgaccattttcaatgataagtgttttgagttttgtcatcttcttgaaggcctttcctttctggtctattacggattccatggagtggaaatt 26754287  T
Q  119 caaatatatcatttcaatgttcctagttcccttt 152  Q
    || ||||||||||||||| || ||||||||||||    
T  26754286 catatatatcatttcaattttactagttcccttt 26754253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 26813479 - 26813342
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||| |||||  ||   | | ||| |||  ||||    
T  26813479 tagaaaattgaccattttcaataataagtgttttgagttttgtcatcttcttgaaggcctttccattccaatctatctcggaattctttgtggggaaatt 26813380  T
Q  119 caaatatatcatttcaatgttcctagttcccttttaac 156  Q
     | ||||||||||||||| || ||||||||||||||||    
T  26813379 tagatatatcatttcaattttactagttcccttttaac 26813342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 25491522 - 25491634
Alignment:
Q  44 aagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaatgttccta 143  Q
    |||||| ||||| |||||| | ||||||||||||| ||||| ||| |||||| ||  |||||| |||||  |||||| ||||||||||||||| || |||    
T  25491522 aagtgttttgagttttgtcgtcttcttgaaggcctctccattccagtctatttcgaattccatggaggggaaattcatatatatcatttcaattttacta 25491621  T
Q  144 gttcccttttaac 156  Q
    |||||||||||||    
T  25491622 gttcccttttaac 25491634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 26637524 - 26637413
Alignment:
Q  44 aagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaatgttccta 143  Q
    |||||| |||||||| ||||| ||||| ||||||| ||||| ||||||||||||   ||||  |||||||||||||| ||||||||||| ||| || |||    
T  26637524 aagtgttttgagatt-gtcatcttcttaaaggcctctccattccactctattacaggttcctctgagggacaattcagatatatcatttgaattttacta 26637426  T
Q  144 gttcccttttaac 156  Q
    |||||||||||||    
T  26637425 gttcccttttaac 26637413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 26743490 - 26743379
Alignment:
Q  44 aagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaatgttccta 143  Q
    |||||| |||||||| ||||| ||||| ||||||| ||||| ||||||||||||   ||||  |||||||||||||| ||||||||||| ||| || |||    
T  26743490 aagtgttttgagatt-gtcatcttcttaaaggcctctccattccactctattacaggttcctctgagggacaattcagatatatcatttgaattttacta 26743392  T
Q  144 gttcccttttaac 156  Q
    |||||||||||||    
T  26743391 gttcccttttaac 26743379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 26939020 - 26938890
Alignment:
Q  21 gaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattca 120  Q
    ||||| |||||| ||| ||| |||||||| || |||||| |||| |||||||||||||| |||| ||| ||| ||| |  ||| |||||||| | |||||    
T  26939020 gaaaaatgaccacttttaatgataagtgttttaagatttttcatcttcttgaaggccttaccattccaatctcttaggacttcaattgaggggccattca 26938921  T
Q  121 aatatatcatttcaatgttcctagttccctt 151  Q
    |||||||||||||||| || |||||| ||||    
T  26938920 aatatatcatttcaattttactagtttcctt 26938890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 26961040 - 26960923
Alignment:
Q  36 tcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaa 135  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||| ||| |   ||||   ||  || |||||||||| |||||||||||||||||||||    
T  26961040 tcaatgataagtgttttgagatttgtcatcttcttgaatgccttttcattcatgtcta---cgggtttcattgagggagaattcaaatatatcatttcaa 26960944  T
Q  136 tgttcctagttcccttttaac 156  Q
    | || ||||||||||||||||    
T  26960943 ttttactagttcccttttaac 26960923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 27609318 - 27609454
Alignment:
Q  20 agaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattc 119  Q
    |||||| || ||||||||||| |||||||| || || |||||||| ||||||||||||||||| | |   ||||| |||  |||||| ||| |   ||||    
T  27609318 agaaaaatggccattttcaatgataagtgttttcagttttgtcatcttcttgaaggcctttcctttcttgtctatcacggattccatggagtggagattc 27609417  T
Q  120 aaatatatcatttcaatgttcctagttcccttttaac 156  Q
    | ||||||||||||||| || ||||||||||||||||    
T  27609418 atatatatcatttcaattttactagttcccttttaac 27609454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 27696787 - 27696923
Alignment:
Q  20 agaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattc 119  Q
    |||||| || ||||||||||| |||| ||| ||||| |||||||| ||||||||||||||||| | |   ||||| |||  |||||| ||| |   ||||    
T  27696787 agaaaaatggccattttcaatgataactgttttgagttttgtcatcttcttgaaggcctttcctttcttgtctatcacggattccatggagtggagattc 27696886  T
Q  120 aaatatatcatttcaatgttcctagttcccttttaac 156  Q
    | ||||||||||||||| || ||||||||||||||||    
T  27696887 atatatatcatttcaattttactagttcccttttaac 27696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 31286536 - 31286401
Alignment:
Q  21 gaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattca 120  Q
    ||||| || ||||||||||| || ||||| || || |||||||| |||||||||||| |||| | |   |||||||||  |||||| ||| |  ||||||    
T  31286536 gaaaaatggccattttcaatgattagtgttttaagttttgtcatcttcttgaaggccattcctttctggtctattacggattccatggagtggaaattca 31286437  T
Q  121 aatatatcatttcaatgttcctagttcccttttaac 156  Q
     ||||||||||||||| || ||||||||||||||||    
T  31286436 tatatatcatttcaattttactagttcccttttaac 31286401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 26144823 - 26144702
Alignment:
Q  35 ttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattc-aaatatatcatttc 133  Q
    |||||| |||||||| |||||||||||||| |||||| | ||| |||||||||||||| || |  || || |||||  | ||||| ||||||||||||||    
T  26144823 ttcaatgataagtgttttgagatttgtcatcttcttgcaagccattccatcccactctgtttctcttgccgttgagtca-aattctaaatatatcatttc 26144725  T
Q  134 aatgttcctagttcccttttaac 156  Q
    ||| |||| ||||||||||||||    
T  26144724 aatattcccagttcccttttaac 26144702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 27425817 - 27425943
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||| ||||||  || ||||| | |||||| ||||||||||||||||||| |   |||||||||  |||||| ||| |  |||||| ||||||||    
T  27425817 ccattttcagtaataaacgttttgaggtgtgtcatcttcttgaaggcctttccattcttgtctattacggattccatagagtgcaaattcatatatatca 27425916  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    ||||||| || || |||||||||||||    
T  27425917 tttcaattttactggttcccttttaac 27425943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 27680936 - 27680810
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||||| |||||||| || || |||||||| ||||||||||||||||| | |   ||||| |||  |||||| ||| |   ||||| ||||||||    
T  27680936 ccattttcaatgataagtgttttcagttttgtcatcttcttgaaggcctttcctttcttgtctatcacggattccatggagtggagattcatatatatca 27680837  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    ||||||| || ||||||||||||||||    
T  27680836 tttcaattttactagttcccttttaac 27680810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 27716707 - 27716833
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||||| |||||||| || || |||||||| ||||||||||||||||| | |   ||||| |||  |||||| ||| |   ||||| ||||||||    
T  27716707 ccattttcaatgataagtgttttcagttttgtcatcttcttgaaggcctttcctttcttgtctatcacggattccatggagtggagattcatatatatca 27716806  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    ||||||| || ||||||||||||||||    
T  27716807 tttcaattttactagttcccttttaac 27716833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 26825801 - 26825668
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| || || |||| |||||||||||| |||||||||||||| ||| |||| |||||||||| ||| ||||||||  ||| | | |||||  ||||    
T  26825801 tagaaaaatggccctttttaataataagtgttttgagatttgtcatcttcatgaaagcctttccattccaatctattacagttttcttggaggggaaatt 26825702  T
Q  119 caaatatatcatttcaatgttcctagttcccttt 152  Q
    || ||||| |||||| |  || ||||||||||||    
T  26825701 catatatagcatttcgactttactagttcccttt 26825668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 25546935 - 25546815
Alignment:
Q  36 tcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaa 135  Q
    ||||| |||||||| |||||||||||||| |||||| | ||| ||| |||||||||| || |  || || |||||  | | || ||||||||||||||||    
T  25546935 tcaatgataagtgttttgagatttgtcatcttcttgcaagccattctatcccactctgtttctcttgccgttgagtcatattttaaatatatcatttcaa 25546836  T
Q  136 tgttcctagttcccttttaac 156  Q
    | |||| ||||||||||||||    
T  25546835 tattcccagttcccttttaac 25546815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 26804451 - 26804315
Alignment:
Q  20 agaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattc 119  Q
    |||||| || ||||||||||| ||||||||  | || |||||||| || |||||||||||||| | |   |||||||||  |||||| ||| |  |||||    
T  26804451 agaaaaatgtccattttcaatgataagtgttctcagttttgtcatctttttgaaggcctttcctttctggtctattacggattccatggagtggaaattc 26804352  T
Q  120 aaatatatcatttcaatgttcctagttcccttttaac 156  Q
    | || |||||||||||| || ||||||||||||||||    
T  26804351 atatttatcatttcaattttactagttcccttttaac 26804315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 25485020 - 25484893
Alignment:
Q  29 accattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatc 128  Q
    ||||| |||||| |||||||| |||||||||||||| |||||| | ||| |||||||||||||| || |  || || ||| |  | | || |||||||||    
T  25485020 accatcttcaatgataagtgttttgagatttgtcatcttcttgcaagccattccatcccactctgtttctcttgccgttgggtcaaattttaaatatatc 25484921  T
Q  129 atttcaatgttcctagttcccttttaac 156  Q
    |||||||| |||  ||||||||||||||    
T  25484920 atttcaatattctcagttcccttttaac 25484893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 27663477 - 27663532
Alignment:
Q  101 ttccattgagggacaattcaaatatatcatttcaatgttcctagttcccttttaac 156  Q
    ||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||    
T  27663477 ttccattgaggaacaattcagatatatcatttcaattttactagttcccttttaac 27663532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 25512845 - 25512724
Alignment:
Q  35 ttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttca 134  Q
    |||||| |||||||| |||||||||||||| |||||| | ||| ||| |||||||||| ||    || || |||||  | | || |||||||||||||||    
T  25512845 ttcaatgataagtgttttgagatttgtcatcttcttgcaagccattctatcccactctgtttttcttgccgttgagtcagattttaaatatatcatttca 25512746  T
Q  135 atgttcctagttcccttttaac 156  Q
    || |||| ||||||||||||||    
T  25512745 atattcccagttcccttttaac 25512724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 27609532 - 27609590
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||| ||||||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  27609532 tagtatcagatgatcatatttagtgcaaaaagagcaaa-gtcgtattaaaactaaataac 27609590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 27680732 - 27680674
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||| ||||||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  27680732 tagtatcagatgatcatatttagtgcaaaaagagcaaa-gtcgtattaaaactaaataac 27680674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 27704675 - 27704733
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||| |||||||||||||||||    
T  27704675 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcatattaaaactaaataac 27704733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 25581676 - 25581620
Alignment:
Q  36 tcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactct 92  Q
    ||||| |||||||| |||||||||||||| || ||||| ||| ||||||||||||||    
T  25581676 tcaatgataagtgttttgagatttgtcatcttattgaaagccattccatcccactct 25581620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 27591427 - 27591485
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||| | || ||||| ||||||||||||||||||    
T  27591427 tagtatgagatggtcatatttagtccaaaatgagc-aaagttgtattaaaactaaataac 27591485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 27697001 - 27697059
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||| ||||||||||||||||  |||| || ||||| |||||||||||||||||||||    
T  27697001 tagtatcagatgatcatatttagtgcaaatagagcaaa-gtcgtattaaaactaaataac 27697059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 28788023 - 28787965
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||||||| |||| ||||||||    
T  28788023 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcgtatcaaaattaaataac 28787965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 28794144 - 28794086
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||||||| |||| ||||||||    
T  28794144 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcgtatcaaaattaaataac 28794086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 26850620 - 26850582
Alignment:
Q  42 ataagtgtcttgagatttgtcattttcttgaaggccttt 80  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  26850620 ataagtgttttgagatttgtcatcttcttgaaggccttt 26850582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 25512713 - 25512661
Alignment:
Q  171 agaataaaccacaatataaataatatatcgaataatatgcatgtaattaagtg 223  Q
    |||||||| ||||||| ||||| ||||| || |||||| ||||||||||||||    
T  25512713 agaataaatcacaatacaaatattatatagagtaatatacatgtaattaagtg 25512661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 27676029 - 27676084
Alignment:
Q  238 tatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    ||||||||| |||||||||| |||||| | |||||| | ||||||||||||||||||    
T  27676029 tatgagatggtcatatttagtccaaaatgagcaaaatt-gtattaaaactaaataac 27676084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 27716918 - 27716969
Alignment:
Q  242 agatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    ||||||||||||||||  ||||||| ||||| || ||||||||||||||||||    
T  27716918 agatgatcatatttagttcaaaaagagcaaa-gttgtattaaaactaaataac 27716969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18653750 - 18653875
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||    |||||||||||| |||||| |||||||||    
T  18653750 catttttaataataagtgttttgagatttgtcatcttcttgaaggcctttccattccagtctattaccagatccattgagggagaattcagatatatcat 18653849  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18653850 ctcaattttacttgttcccttttaac 18653875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18677832 - 18677957
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||| ||||||||    |||||||||||| |||||| |||||||||    
T  18677832 cattttcaataataagtgttttgagatttgtcatcttcttgaaggtctttccattccagtctattaccagatccattgagggagaattcagatatatcat 18677931  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18677932 ctcaattttacttgttcccttttaac 18677957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18697674 - 18697799
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||   ||| |||||||| || ||| |||||||||    
T  18697674 cattttcaataataagtgttttgagatttgtcatcttcttgaaggcctttccattccagtctattacgggatccgttgagggagaactcagatatatcat 18697773  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18697774 ctcaattttacttgttcccttttaac 18697799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18687886 - 18688011
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    |||||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||| ||||||||    |||||||||||| |||||| |||||||||    
T  18687886 catttttaataataagtgttttgagatttgtcatcttcttgaaagcctttccattccagtctattaccagatccattgagggagaattcagatatatcat 18687985  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18687986 ctcaattttacttgttcccttttaac 18688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18722346 - 18722471
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||   ||| ||||| || |||||| |||||||||    
T  18722346 catttttaataataagtgttttgagatttgtcatcttcttgaaggcctttccattccagtctattacgggatccgttgagcgagaattcagatatatcat 18722445  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18722446 ctcaattttacttgttcccttttaac 18722471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 18729768 - 18729893
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcat 130  Q
    |||||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||| ||||||||    |||||||||||| |||||| |||||||||    
T  18729768 catttttaataataagtgttttgagatttgtcatcttcttgaaagcctttccattccagtctattaccagatccattgagggagaattcagatatatcat 18729867  T
Q  131 ttcaatgttcctagttcccttttaac 156  Q
     ||||| || || |||||||||||||    
T  18729868 ctcaattttacttgttcccttttaac 18729893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 18075738 - 18075613
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||| ||||||  || ||||| | |||||| ||||||||||||||||||| |   |||||||||  |||||| ||| |  |||||| ||||||||    
T  18075738 ccattttcagtaataaacgttttgaggtgtgtcatcttcttgaaggcctttccattcttgtctattacggattccatagagtgcaaattcatatatatca 18075639  T
Q  130 tttcaatgttcctagttcccttttaa 155  Q
    ||||||| || || ||||||||||||    
T  18075638 tttcaattttactggttcccttttaa 18075613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 5089252 - 5089324
Alignment:
Q  21 gaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactcta 93  Q
    ||||| |||||| ||| ||| | |||||| |||||| || |||||||||||||||||||||||| ||| ||||    
T  5089252 gaaaaatgaccacttttaatgacaagtgttttgagaattttcattttcttgaaggcctttccattccaatcta 5089324  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 28125886 - 28126015
Alignment:
Q  27 tgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatata 126  Q
    ||||||||||  ||||||||||| || ||||||| ||| ||||||||||| |||| || ||| ||||||| |  |||||| |||||| ||||| ||||||    
T  28125886 tgaccattttttataataagtgttttaagatttgacatcttcttgaaggcttttcgattccagtctattatgggttccatagagggataattccaatata 28125985  T
Q  127 tcatttcaatgttcctagttcccttttaac 156  Q
    ||||||||||||| | ||||||||||||||    
T  28125986 tcatttcaatgttaccagttcccttttaac 28126015  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 266552 - 266689
Alignment:
Q  19 tagaaaactgaccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaatt 118  Q
    ||||||| || ||||||||||| | |||||| |||||||||||||| ||||||||||||||||| | |   ||||||||   |||||| ||| |  ||||    
T  266552 tagaaaaatgcccattttcaatgacaagtgttttgagatttgtcatcttcttgaaggcctttcctttctggtctattacaggttccatcgagtggaaatt 266651  T
Q  119 caaatatatcatttcaatgttcctagttcccttttaac 156  Q
    || ||||||||||||||  || ||||||||||||||||    
T  266652 catatatatcatttcaactttactagttcccttttaac 266689  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 28131722 - 28131834
Alignment:
Q  44 aagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatcatttcaatgttccta 143  Q
    |||||| || ||||||| ||| |||||||||||| ||| || ||| |||||||||  |||||||||| ||||||| | | ||||||||||||| || | |    
T  28131722 aagtgttttaagatttgacatcttcttgaaggccattcgattccagtctattacgggttccattgagtgacaattaagacatatcatttcaatttttcca 28131821  T
Q  144 gttcccttttaac 156  Q
    |||||||||||||    
T  28131822 gttcccttttaac 28131834  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 266761 - 266819
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||    
T  266761 tagtatgagatggtcatattttgtccaaaaagagcaaa-gtcgtattaaaactaaataac 266819  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 61546 - 61420
Alignment:
Q  30 ccattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccatcccactctattacgttttccattgagggacaattcaaatatatca 129  Q
    ||||||||| ||||||  || ||||| | |||||| ||||||||||||||||||| |   |||||||||  |||||| ||| |  |||||| ||||||||    
T  61546 ccattttcagtaataaacgttttgaggtgtgtcatcttcttgaaggcctttccattcttgtctattacggattccatagagtgcaaattcatatatatca 61447  T
Q  130 tttcaatgttcctagttcccttttaac 156  Q
    ||||||| || || |||||||||||||    
T  61446 tttcaattttactggttcccttttaac 61420  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 29272250 - 29272308
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||| ||||||| |||||||| |||||||| ||||| |||||||||||||||||||||    
T  29272250 tagtatcagatgataatatttagtccaaaaagagcaaa-gtcgtattaaaactaaataac 29272308  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 16353079 - 16353146
Alignment:
Q  21 gaaaactgaccattttcaataataagtgtcttgagatttgt-cattttcttgaaggcctttccatccca 88  Q
    ||||| |||||||||  |||||||||||| ||||| ||||| ||| ||||||||||||| |||||||||    
T  16353079 gaaaaatgaccatttcgaataataagtgttttgag-tttgtccatcttcttgaaggcctctccatccca 16353146  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 17991420 - 17991473
Alignment:
Q  31 cattttcaataataagtgtcttgagatttgtcattttcttgaaggcctttccat 84  Q
    |||||||||| |||||||| ||||| ||| |||| |||||||||||||||||||    
T  17991420 cattttcaatgataagtgttttgagttttttcatcttcttgaaggcctttccat 17991473  T

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Target: scaffold1870 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 551 - 493
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||| ||| |||||||||||||    
T  551 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcatatcaaaactaaataac 493  T

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Target: scaffold0277 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 3115 - 3173
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||| ||| |||||||||||||    
T  3115 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcatatcaaaactaaataac 3173  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 12078 - 12136
Alignment:
Q  235 tagtatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    |||||||||||| |||||||||| |||||||| || |||||| ||| |||||||||||||    
T  12078 tagtatgagatggtcatatttagtccaaaaagagc-aaagtcatatcaaaactaaataac 12136  T

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Target: scaffold0419 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 9266 - 9211
Alignment:
Q  238 tatgagatgatcatatttagaccaaaaagggcaaaagtcgtattaaaactaaataac 294  Q
    ||||||||| |||||||||| |||||||| ||||| ||| ||| |||||||||||||    
T  9266 tatgagatggtcatatttagtccaaaaagagcaaa-gtcatatcaaaactaaataac 9211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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