View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18330_high_19 (Length: 254)
Name: NF18330_high_19
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3014518 - 3014760
Alignment:
| Q |
1 |
taattctttctattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014518 |
taattctttctattcatgtttttgtatttcatatttcagcggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgatt |
3014617 |
T |
|
| Q |
101 |
cccaaatttacctacaatcatgaatatgtgcaggttagccttttttccactagttattattatagttcaatgtttctttgtcacagatctcataacatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3014618 |
cccaaatttacctacaatcatgaatatgtgcaggttagccttttttcaactagttattattatagttcaatgtttcttcgtcgcagatctcataacatat |
3014717 |
T |
|
| Q |
201 |
cttgttattgcagagtcttcgacctagtcgtttatctgtggtc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014718 |
cttgttattgcagagtcttcgacctagtcgtttatctgtggtc |
3014760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 183042 - 183119
Alignment:
| Q |
13 |
ttcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
90 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 591338 - 591250
Alignment:
| Q |
11 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
99 |
Q |
| |
|
|||| ||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
591338 |
tattgatgttctagtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
25 |
tatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| |||| ||| |||||||||| ||| || |
|
|
| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
|
| Q |
125 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
172 |
Q |
| |
|
|||||||||||||| ||||| | | | |||||||||| ||||||| |
|
|
| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 44606401 - 44606488
Alignment:
| Q |
11 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
98 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||| |
|
|
| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 44627892 - 44627979
Alignment:
| Q |
11 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
98 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||| ||||||| |
|
|
| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University