View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_high_24 (Length: 237)
Name: NF18330_high_24
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_high_24 |
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| [»] scaffold0324 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18785791 - 18786013
Alignment:
| Q |
1 |
acctcttgttcttttgttcagaaccttcacatggtctaaatcttgaactttttcttgaatagttggcataacaaagccaacttct-gagtttgagttaca |
99 |
Q |
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| T |
18785791 |
acctcttgttcttttgttcagaaccttcacatgatctaaatcttgaacttcttcttaaatagttggcataacagagccaacttcttgagcttgagttgca |
18785890 |
T |
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| Q |
100 |
cctttctctttcttagccttcttaggatttggttcagaagcttcaccttcagcagcttctgcagttgctttcttgttagattttctcttcttggaaacaa |
199 |
Q |
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| T |
18785891 |
cctttctctttcttagccttcttaggctttggttcagaagcttcaccttcagcggcttctgaagttgctttcttgttagattctcccttcttggaaacaa |
18785990 |
T |
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| Q |
200 |
ctggaagagaaccaccatatatg |
222 |
Q |
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| T |
18785991 |
ctggaagagaaccaccatatatg |
18786013 |
T |
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Target: scaffold0324 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0324
Description:
Target: scaffold0324; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 8756 - 8926
Alignment:
| Q |
5 |
cttgttcttttgttcagaaccttcacatggtctaaatcttgaactttttcttgaatagttggcataacaaagccaacttctg-agtttgagttacacctt |
103 |
Q |
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| T |
8756 |
cttgttcttttgttcagaaccttcacaaggtctaaatcttgaacttcttcttgaatagttggcataacaaagctaacttcttcagcttgagtgacacctt |
8855 |
T |
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| Q |
104 |
tctctttcttagccttcttaggatttggttcagaagcttca-cct--tcagcagcttctgcagttgctttc |
171 |
Q |
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| T |
8856 |
tctctttcttagcctttttagactttgcttcagaagcttcttcctcatcagcagcttctgaagttgctttc |
8926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 20912411 - 20912462
Alignment:
| Q |
109 |
ttcttagccttcttaggatttggttcagaagcttcaccttcagcagcttctg |
160 |
Q |
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| T |
20912411 |
ttcttagcctttttaggctttggttaagaagcttcaccttcagcagcttctg |
20912462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 25606196 - 25606237
Alignment:
| Q |
109 |
ttcttagccttcttaggatttggttcagaagcttcaccttca |
150 |
Q |
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| T |
25606196 |
ttcttagccttcttaggctttggctcagaagcttcagcttca |
25606237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 25614534 - 25614575
Alignment:
| Q |
109 |
ttcttagccttcttaggatttggttcagaagcttcaccttca |
150 |
Q |
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| T |
25614534 |
ttcttagccttcttaggctttggctcagaagcttcagcttca |
25614575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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