View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_high_27 (Length: 211)
Name: NF18330_high_27
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 34207498 - 34207681
Alignment:
| Q |
15 |
caaaggacacaagtattttcagcaagggtataaagttgtaataaaacacaacatcaagggcaataaaatatagggttatattgaaagtaacaagagaagt |
114 |
Q |
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| T |
34207498 |
caaaggacacaagtattttcagcaagggtataaagttgtaataaaacacaacatcaagggcaataaaatatagggttgtattgaaagtaacaagagaagt |
34207597 |
T |
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| Q |
115 |
agttacctgcggtaagaaacaggaacaataccagcacgatattgagcaattttgaggaacataggcatagcaagatcaaagtgt |
198 |
Q |
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| T |
34207598 |
agttacctgcggtaagaaacaggaacaataccagcacgatattgagcaattttgaggaacataggcatagcaagatcaaagtgt |
34207681 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 23858576 - 23858651
Alignment:
| Q |
119 |
acctgcggtaagaaacaggaacaataccagcacgatattgagcaattttgaggaacataggcatagcaagatcaaa |
194 |
Q |
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| T |
23858576 |
acctgcggtaagcaacagggacaataccagcacgatactcggcaatcttaagaaacataggcatagcaagatcaaa |
23858651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 22313971 - 22314020
Alignment:
| Q |
148 |
gcacgatattgagcaattttgaggaacataggcatagcaagatcaaagtg |
197 |
Q |
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| T |
22313971 |
gcacgatattgagcgatcttaaggaacataggcatagcaagatcaaagtg |
22314020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 41490981 - 41491030
Alignment:
| Q |
148 |
gcacgatattgagcaattttgaggaacataggcatagcaagatcaaagtg |
197 |
Q |
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| T |
41490981 |
gcacgatattcagcgattttaaggaacataggcatggcaagatcaaagtg |
41491030 |
T |
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