View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_1 (Length: 685)
Name: NF18330_low_1
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 670
Target Start/End: Original strand, 10266114 - 10266779
Alignment:
| Q |
8 |
cgaagaaaataggaactaagtgactagtataaaaaacctcacccagttaatccaagaaagaagaatgatgtcaggaggttcttagtaatgggcggtcgtg |
107 |
Q |
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| T |
10266114 |
cgaagaagataggaactaagtgactagtataaaaaacctcacccagttaatccaagaaagaagaatgatgtcaggaggttcttagtaatgggtggtcgtg |
10266213 |
T |
|
| Q |
108 |
ttcgtcttcagccatcatggtatgataaaaaatactcttacaacgttagaaaatgaacaatgcaatcagacttagagggcacaaagaagttgtaagttaa |
207 |
Q |
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| T |
10266214 |
ttcgtcttcagccatcatggtatgataaaaaatactcttacaacgttagaaaatgaacaatgcaatcagaattggagggcacaaagaagttgtaagttaa |
10266313 |
T |
|
| Q |
208 |
attttatttctaaagtttgaatatgcagattgtagcataattagcaggtattggcctatgctgctaacaatcaaactagtcaaacacatatatatcataa |
307 |
Q |
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| T |
10266314 |
attttatttctaaagtttgaatatgcagattgtagcataattagcaggtattggcttatgctgctaacaatcaaactagtcaaccacatatatatcataa |
10266413 |
T |
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| Q |
308 |
aagtggaagtctgaaaccattgggaacaaacaaacaataatactagaacaagattttttaaataataatgaataacatcaaactaaaggtggtcagact- |
406 |
Q |
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| T |
10266414 |
aagtggaagtctgaaaccattgggaacaaacaaacaataatactagaacaagattttttaaataataatgaataacatcaaactaaaggtggtcagactg |
10266513 |
T |
|
| Q |
407 |
--ggcacccaggggaaaatagggaatattctcatacagcggggattatcctatatcccacactctaatcttnnnnnnntagtaggtcataaaaaccataa |
504 |
Q |
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| T |
10266514 |
gcggctcccaggtgaaaatagggaatattctcatacagtggggattatcctatatcccacaccctaatcttaaaaaaatagtaggtcataaaaaccataa |
10266613 |
T |
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| Q |
505 |
tccaaccctgataaaaaatcaggtaaacataacagctgtgttatttgccaacaaaatacaaatacgtatgtatttatctctgaagtttagctatcacttg |
604 |
Q |
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| T |
10266614 |
tccaaccctgataaaaaatcaggtaaacataacagctgtgttatttgccaacaaaatacaaatacgtatgtatttatctctgaagtttagctatcacttg |
10266713 |
T |
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| Q |
605 |
cttttgatcttatataacttacacactgttagatcaatcattgataaacataaccataggagaccc |
670 |
Q |
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| T |
10266714 |
cttttgatcttatataacttacacactgttagatcaatcattgataaacataaccataggagaccc |
10266779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 10281121 - 10281175
Alignment:
| Q |
42 |
aacctcacccagttaatccaagaaagaagaatgatgtcaggaggttcttagtaat |
96 |
Q |
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| T |
10281121 |
aaccttacccagttaatccaagaaagaagaatgacatcaatagcttcttagtaat |
10281175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 30580858 - 30580817
Alignment:
| Q |
39 |
aaaaacctcacccagttaatccaagaaagaagaatgatgtca |
80 |
Q |
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| T |
30580858 |
aaaaaccttacccagttaatccgagaaagaaaaatgatgtca |
30580817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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