View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_13 (Length: 349)
Name: NF18330_low_13
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_13 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 22534352 - 22534023
Alignment:
| Q |
1 |
cttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534352 |
cttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattat |
22534253 |
T |
|
| Q |
101 |
cataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttccagaagcggca |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
22534252 |
cataaccaaacacgaacggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcagatattgttctcgtggcggggttccagaagcggca |
22534153 |
T |
|
| Q |
201 |
caatactcttcgaaatttagtaccctcatcatgatcataaccgcgcaagaaaagcaatccattgcatgaaccaagaatattgggaactacgttgtcccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534152 |
caatactcttcgaaatttagtaccctcatcatgatcataaccgcgcaagaaaagcaatccattgcatgaaccaagaatattgggaactacgttgtcccac |
22534053 |
T |
|
| Q |
301 |
aactggtagtaaggatccttaggaagggtg |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
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| T |
22534052 |
aactggtggtaaggatccttaggaagggtg |
22534023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 22525515 - 22525843
Alignment:
| Q |
2 |
ttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatc |
101 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22525515 |
ttttaatagttctccaaacattatcacccatggtaatgactctcacatcattaccgcctgaatttaaggctacaactttataggtgtcggttgaattatc |
22525614 |
T |
|
| Q |
102 |
ataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttccagaagcggcac |
201 |
Q |
| |
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|||||||||||| || || |||||| |||||||| || |||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
22525615 |
ataaccaaacacaaactcataaaattcgcaatcatcataatcgaaatcagttctcaatatatcggatattgttctcgtagcggggtttcagaagcggcat |
22525714 |
T |
|
| Q |
202 |
aatactcttcgaaatttagtaccctcatcatgatcataaccgcgcaagaaaagcaatccattgcatgaaccaagaatattgggaactacgttgtcccaca |
301 |
Q |
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|||||| || |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
22525715 |
aatacttttttaaatttagtaccctcaccatgaccataaccgcgcaagaaaagcaatccattgcatgaaccaagaataatgggaactaccttgtcccaca |
22525814 |
T |
|
| Q |
302 |
actggtagtaaggatccttaggaagggtg |
330 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
22525815 |
accggtagtaaggatccttaggaagggtg |
22525843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 7327821 - 7327775
Alignment:
| Q |
67 |
aaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
113 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |||||| |
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|
| T |
7327821 |
aaggctacaaccttataagtgttggttgaattatcataacaaaacac |
7327775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 20456153 - 20456102
Alignment:
| Q |
62 |
aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
113 |
Q |
| |
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|||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| |
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| T |
20456153 |
aattcaaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacac |
20456102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 8303 - 8199
Alignment:
| Q |
12 |
tctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatcataaccaaac |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||||| |||| ||||||| ||||| ||||| |||||||||||| |||||||||||||| |
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| T |
8303 |
tctccaaacattatcacccaaactaaagactctcatttcgttaccagttgaacttaaggccacaactttataagtgtcggttgaactatcataaccaaac |
8204 |
T |
|
| Q |
112 |
acgaa |
116 |
Q |
| |
|
||||| |
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|
| T |
8203 |
acgaa |
8199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 25352 - 25251
Alignment:
| Q |
12 |
tctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatcataaccaaac |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| || ||||| |||| |||| | ||||||||||| ||||| ||| || | |||||||||||| |
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|
| T |
25352 |
tctccaaacattatcacccaaactaaagactttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaac |
25253 |
T |
|
| Q |
112 |
ac |
113 |
Q |
| |
|
|| |
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|
| T |
25252 |
ac |
25251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 3781 - 3740
Alignment:
| Q |
75 |
aaccttataggtgtcggttgaattatcataaccaaacacgaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |
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| T |
3781 |
aaccttataaatgtcggttgaattatcataaacaaacacgaa |
3740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 2910673 - 2910627
Alignment:
| Q |
67 |
aaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
113 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
2910673 |
aaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
2910627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 11982095 - 11982135
Alignment:
| Q |
73 |
acaaccttataggtgtcggttgaattatcataaccaaacac |
113 |
Q |
| |
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||||||||||| |||||| |||||||| ||||||||||||| |
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|
| T |
11982095 |
acaaccttataagtgtcgcttgaattaacataaccaaacac |
11982135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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