View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_14 (Length: 347)
Name: NF18330_low_14
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 46738903 - 46738594
Alignment:
| Q |
10 |
atgaaaatgaaaaagaggaggtatatggatttaccaaaacagacaccatttgcacttaataatcagatacagattaatttttctactaaaactttctttt |
109 |
Q |
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| T |
46738903 |
atgaagatgaaaaagatgaggtatatggatttaccaaaacagacatcatttgcacttaataatcagattcagattaatttttctactaaaactttctttt |
46738804 |
T |
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| Q |
110 |
taagggattttctgctaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaaaccattggcatgc |
209 |
Q |
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| T |
46738803 |
taagggattttctactaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaa-----------gc |
46738715 |
T |
|
| Q |
210 |
tagccagattatacatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46738714 |
tagccagattatacatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatt |
46738615 |
T |
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| Q |
310 |
tgctcagttagacattcactt |
330 |
Q |
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||||||||||||||||||||| |
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| T |
46738614 |
tgctcagttagacattcactt |
46738594 |
T |
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