View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18330_low_16 (Length: 321)

Name: NF18330_low_16
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18330_low_16
NF18330_low_16
[»] chr1 (11 HSPs)
chr1 (18-258)||(38469492-38469733)
chr1 (259-321)||(26144235-26144297)
chr1 (259-321)||(7433425-7433487)
chr1 (266-321)||(32982181-32982236)
chr1 (262-321)||(42311066-42311125)
chr1 (259-317)||(23313218-23313276)
chr1 (259-321)||(35907532-35907594)
chr1 (279-315)||(44352614-44352650)
chr1 (262-321)||(41972400-41972458)
chr1 (287-320)||(321503-321536)
chr1 (279-316)||(31866977-31867014)
[»] chr7 (16 HSPs)
chr7 (258-321)||(5555466-5555529)
chr7 (263-321)||(8394109-8394167)
chr7 (259-321)||(14777232-14777294)
chr7 (259-321)||(3114221-3114283)
chr7 (263-321)||(36630800-36630858)
chr7 (279-321)||(8867856-8867898)
chr7 (279-321)||(34389181-34389223)
chr7 (266-311)||(26502797-26502842)
chr7 (266-311)||(26589872-26589917)
chr7 (279-321)||(10876832-10876874)
chr7 (279-321)||(33685564-33685606)
chr7 (279-321)||(37002269-37002311)
chr7 (288-321)||(35090177-35090210)
chr7 (286-319)||(43184595-43184628)
chr7 (279-311)||(7002725-7002757)
chr7 (279-311)||(7048596-7048628)
[»] chr2 (17 HSPs)
chr2 (259-321)||(42439966-42440028)
chr2 (258-321)||(41251759-41251822)
chr2 (259-321)||(6403929-6403991)
chr2 (259-321)||(17445164-17445226)
chr2 (259-318)||(2958228-2958287)
chr2 (259-321)||(32127266-32127328)
chr2 (259-321)||(35962695-35962757)
chr2 (258-321)||(18981596-18981658)
chr2 (259-321)||(16405580-16405642)
chr2 (279-321)||(45418583-45418625)
chr2 (279-321)||(8147351-8147393)
chr2 (279-321)||(44084728-44084770)
chr2 (279-318)||(26237957-26237996)
chr2 (263-321)||(31581747-31581805)
chr2 (285-321)||(771005-771041)
chr2 (288-319)||(7072679-7072710)
chr2 (262-309)||(34523223-34523270)
[»] chr5 (18 HSPs)
chr5 (258-319)||(39434675-39434736)
chr5 (262-321)||(13817960-13818019)
chr5 (259-321)||(26283443-26283505)
chr5 (263-320)||(1776502-1776559)
chr5 (259-320)||(36293747-36293808)
chr5 (262-321)||(10033910-10033969)
chr5 (259-321)||(3155756-3155818)
chr5 (279-319)||(31680367-31680407)
chr5 (279-321)||(17332676-17332718)
chr5 (262-315)||(14316641-14316694)
chr5 (279-321)||(12278985-12279027)
chr5 (279-321)||(31501841-31501883)
chr5 (259-321)||(37254621-37254683)
chr5 (266-321)||(19985926-19985981)
chr5 (262-309)||(26543902-26543949)
chr5 (259-321)||(39657631-39657693)
chr5 (258-291)||(16154988-16155021)
chr5 (293-321)||(33430335-33430363)
[»] chr4 (26 HSPs)
chr4 (258-321)||(20129289-20129352)
chr4 (259-321)||(13012168-13012230)
chr4 (259-321)||(47500753-47500815)
chr4 (258-321)||(25930687-25930750)
chr4 (258-321)||(26439404-26439467)
chr4 (259-321)||(34407409-34407471)
chr4 (263-321)||(36382470-36382528)
chr4 (279-321)||(6690360-6690402)
chr4 (259-321)||(29319830-29319892)
chr4 (279-321)||(30216867-30216909)
chr4 (259-321)||(43143709-43143771)
chr4 (259-321)||(43355884-43355946)
chr4 (259-320)||(7769308-7769369)
chr4 (282-321)||(3293021-3293060)
chr4 (262-311)||(27363344-27363393)
chr4 (279-316)||(49908782-49908819)
chr4 (262-321)||(6235515-6235574)
chr4 (262-321)||(10353009-10353068)
chr4 (262-321)||(17511359-17511417)
chr4 (262-321)||(50205202-50205261)
chr4 (262-321)||(40528996-40529057)
chr4 (279-316)||(5517494-5517531)
chr4 (281-321)||(30109958-30109998)
chr4 (281-315)||(17554998-17555032)
chr4 (262-315)||(6212029-6212082)
chr4 (280-321)||(42333901-42333942)
[»] scaffold0002 (1 HSPs)
scaffold0002 (259-321)||(480582-480644)
[»] chr6 (9 HSPs)
chr6 (259-321)||(398597-398659)
chr6 (259-321)||(34948883-34948945)
chr6 (256-320)||(13837798-13837862)
chr6 (279-321)||(18339106-18339148)
chr6 (279-321)||(28996730-28996772)
chr6 (279-315)||(13647017-13647053)
chr6 (279-321)||(31028489-31028531)
chr6 (285-321)||(29743289-29743325)
chr6 (279-315)||(34385519-34385555)
[»] chr3 (18 HSPs)
chr3 (259-321)||(22968569-22968631)
chr3 (258-321)||(19390125-19390188)
chr3 (258-321)||(39771769-39771832)
chr3 (263-321)||(34084247-34084305)
chr3 (258-321)||(6269551-6269614)
chr3 (259-321)||(6503694-6503756)
chr3 (279-321)||(45182981-45183023)
chr3 (279-321)||(6931019-6931061)
chr3 (259-321)||(11018337-11018399)
chr3 (263-321)||(22922141-22922199)
chr3 (279-321)||(33040953-33040995)
chr3 (262-320)||(40081865-40081922)
chr3 (279-316)||(6890998-6891035)
chr3 (279-318)||(5354709-5354748)
chr3 (278-321)||(27935177-27935220)
chr3 (279-318)||(35514266-35514305)
chr3 (279-321)||(19565626-19565668)
chr3 (279-319)||(45335875-45335915)
[»] chr8 (10 HSPs)
chr8 (258-321)||(39914494-39914557)
chr8 (263-321)||(15838270-15838328)
chr8 (262-321)||(29728511-29728570)
chr8 (259-321)||(34136950-34137012)
chr8 (279-321)||(4404008-4404050)
chr8 (283-321)||(16788150-16788188)
chr8 (279-321)||(23402108-23402150)
chr8 (279-321)||(36408551-36408593)
chr8 (262-319)||(3648921-3648978)
chr8 (279-319)||(2729323-2729363)
[»] scaffold2142 (1 HSPs)
scaffold2142 (259-321)||(502-564)
[»] scaffold0069 (1 HSPs)
scaffold0069 (259-321)||(17822-17884)
[»] scaffold0502 (1 HSPs)
scaffold0502 (279-321)||(5230-5272)
[»] scaffold0154 (1 HSPs)
scaffold0154 (279-321)||(31480-31522)
[»] scaffold0769 (1 HSPs)
scaffold0769 (262-309)||(1260-1307)
[»] scaffold0012 (1 HSPs)
scaffold0012 (279-309)||(194028-194058)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 38469733 - 38469492
Alignment:
Q  18 agttatgagtcacacaccacttttgaatcttcgtagcttttctaaataacaataaatcatctgcaaacattaagtgcgagacttcaggaccccttctacc 117  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469733 agttatgagtcacacaccacatttgaatcttcgtagcttctctaaataacaataaatcatctgcaaacattaagtgcgagacttcaggaccccttctacc 38469634  T
Q  118 aaccttgatcgattt-ccagttcccttgattaacttcatgcaacatcatgtgggaaagtttatccatacacaagatgaacaaataaggtgatattgggtc 216  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38469633 aaccttgatcgattttccagttcctttgattaacttcatgcaacatcatgcgggaaagtttatccatacacaagatgaacaaataaggcgatattgggtc 38469534  T
Q  217 tcctcgatgaattcctctccgaggcctaaagtaatatgctct 258  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  38469533 tcctcgatgaattcctctccgagtcctaaagtaatctgctct 38469492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 26144235 - 26144297
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 26144297  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 7433425 - 7433487
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgc 7433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 32982236 - 32982181
Alignment:
Q  266 ggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgc 32982181  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 42311125 - 42311066
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgc 42311066  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 23313218 - 23313276
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataattt 317  Q
    |||||||||||||||||| |||||| | |||||||| ||||||||||||| ||| ||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgattt 23313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 35907532 - 35907594
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||  ||||   ||||||| |||||||||||||||||| ||||||||||||||||    
T  35907532 catgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgc 35907594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 44352650 - 44352614
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44352650 ggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 41972458 - 41972400
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||| |||||   ||||||||||||||||||| || |||||||||||||||||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgc 41972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 321536 - 321503
Alignment:
Q  287 cgggcggtcgcccgggctcgatcgataatttttg 320  Q
    |||||||||| |||||||||||||||||||||||    
T  321536 cgggcggtcgtccgggctcgatcgataatttttg 321503  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 31866977 - 31867014
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatt 316  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  31866977 ggcgaccccgggcggtcgcccgggttcgaccgataatt 31867014  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 5555466 - 5555529
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5555466 tcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 5555529  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 8394109 - 8394167
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 8394167  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 14777294 - 14777232
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgc 14777232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 3114283 - 3114221
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgc 3114221  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 36630800 - 36630858
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgc 36630858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 8867898 - 8867856
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 8867856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 34389223 - 34389181
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 34389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 26502797 - 26502842
Alignment:
Q  266 ggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcga 311  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  26502797 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcga 26502842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 26589917 - 26589872
Alignment:
Q  266 ggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcga 311  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  26589917 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcga 26589872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 10876874 - 10876832
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||| |||| | ||||||||||||||||||||||||||||||    
T  10876874 ggcgaacccgtgtggtcgcccgggctcgatcgataatttttgc 10876832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 33685564 - 33685606
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||    
T  33685564 ggcgaccccaggcagtcgctcgggctcgatcgataatttttgc 33685606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 37002311 - 37002269
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgc 37002269  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 35090177 - 35090210
Alignment:
Q  288 gggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||| |||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgc 35090210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 43184628 - 43184595
Alignment:
Q  286 ccgggcggtcgcccgggctcgatcgataattttt 319  Q
    |||||||||||| |||||||||||||||||||||    
T  43184628 ccgggcggtcgctcgggctcgatcgataattttt 43184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 7002725 - 7002757
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcga 311  Q
    |||||||||| ||||||||||||||||||||||    
T  7002725 ggcgaccccgagcggtcgcccgggctcgatcga 7002757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 7048596 - 7048628
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcga 311  Q
    |||||||||| ||||||||||||||||||||||    
T  7048596 ggcgaccccgagcggtcgcccgggctcgatcga 7048628  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 42439966 - 42440028
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 42440028  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 41251822 - 41251759
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  41251822 tcatgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgc 41251759  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 6403991 - 6403929
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 6403929  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 17445226 - 17445164
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgc 17445164  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttt 318  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 32127328 - 32127266
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 32127266  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 35962695 - 35962757
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgc 35962757  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 18981596 - 18981658
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  18981596 tcatgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgc 18981658  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 16405580 - 16405642
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||| | ||| ||||| |||||||||||||||||| |||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgc 16405642  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 45418583 - 45418625
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 45418625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 8147351 - 8147393
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgc 8147393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 44084770 - 44084728
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgc 44084728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 26237957 - 26237996
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttt 318  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgatattttt 26237996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 31581805 - 31581747
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||| || |||||||| ||||||||||||| ||||||| ||||| |||||||    
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgc 31581747  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 771005 - 771041
Alignment:
Q  285 cccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||| ||||||    
T  771005 cccgggcggtcgcccgggctcgatcgataacttttgc 771041  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 319
Target Start/End: Complemental strand, 7072710 - 7072679
Alignment:
Q  288 gggcggtcgcccgggctcgatcgataattttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  7072710 gggcggtcgcccgggctcgatcgataattttt 7072679  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 34523223 - 34523270
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatc 309  Q
    |||||||| |||||   |||||||||||||||||||||||||||||||    
T  34523223 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 34523270  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 39434675 - 39434736
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataattttt 319  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39434675 tcatgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttt 39434736  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 13817960 - 13818019
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgc 13818019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 26283505 - 26283443
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgc 26283443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 1776559 - 1776502
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttg 320  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttg 1776502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 36293808 - 36293747
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttg 320  Q
    |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttg 36293747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 10033910 - 10033969
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgc 10033969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 3155818 - 3155756
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| ||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgc 3155756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 31680367 - 31680407
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataattttt 319  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataattttt 31680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 17332718 - 17332676
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgc 17332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    ||||||||||||||| |||||| | ||||||||||||| |||||||||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 12279027 - 12278985
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgc 12278985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 31501883 - 31501841
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgc 31501841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 37254621 - 37254683
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||  ||||   ||||||||| ||||||||||| |||||||||||||||||||||    
T  37254621 catgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgc 37254683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 19985926 - 19985981
Alignment:
Q  266 ggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||| |||||| || ||||| |||||||||| ||| ||||||||||||||||||||    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgc 19985981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 26543949 - 26543902
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatc 309  Q
    |||||||| |||||   |||||||||||||||||||||||||||||||    
T  26543949 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 26543902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 39657693 - 39657631
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||  | |||||||||| | ||||||  |||||||||| ||||||||||||    
T  39657693 catgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgc 39657631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 16154988 - 16155021
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggc 291  Q
    ||||||||||||||||||| ||||||||||||||    
T  16154988 tcatgggcggttctaccgtatggcgaccccgggc 16155021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 33430335 - 33430363
Alignment:
Q  293 gtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgc 33430363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 20129289 - 20129352
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20129289 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 20129352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 13012168 - 13012230
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 13012230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 47500753 - 47500815
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 47500815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 25930687 - 25930750
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||    
T  25930687 tcatgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgc 25930750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 26439467 - 26439404
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  26439467 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 26439404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 34407471 - 34407409
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 34407409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 36382528 - 36382470
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgc 36382470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 6690402 - 6690360
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 6690360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 29319892 - 29319830
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||||||    
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgc 29319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 30216909 - 30216867
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 30216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 43143771 - 43143709
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||  |||||  | |||||||||||||||||||||||||||||||||||||||||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgc 43143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 43355884 - 43355946
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| |||||||| ||| |||||||||||||| ||||||||||||||    
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgc 43355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 7769308 - 7769369
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttg 320  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 3293060 - 3293021
Alignment:
Q  282 gaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgc 3293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 27363344 - 27363393
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcga 311  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcga 27363393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatt 316  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 6235515 - 6235574
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| ||||||  | |||||||||| ||||||||| |||||||||||||    
T  6235515 gggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgc 6235574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 10353068 - 10353009
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||  |||||  ||||||||| ||||||||||||||||| |||||||||||||||    
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgc 10353009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 17511417 - 17511359
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| ||||||||| || ||||||||| | |||||||||||||||||||    
T  17511417 gggcggttctaccgtatggcgaccctgg-cggtcgcccagactcgatcgataatttttgc 17511359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 50205261 - 50205202
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||  |||||  ||||| |||||||||||||||| ||||||||||||||||||||    
T  50205261 gggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgc 50205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 40528996 - 40529057
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggc--ggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| ||||||||| ||||  ||||| |||| |||||||||||||||||||    
T  40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgc 40529057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 5517531 - 5517494
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatt 316  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5517531 ggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 30109958 - 30109998
Alignment:
Q  281 cgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgc 30109998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 17554998 - 17555032
Alignment:
Q  281 cgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  17554998 cgaccccgggtggtcgcccgggctcgatcgataat 17555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 6212082 - 6212029
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    ||||||||  |||||  ||||||| |||||||||||||| ||||||||||||||    
T  6212082 gggcggtttcaccgtccggcgacctcgggcggtcgcccgagctcgatcgataat 6212029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 42333942 - 42333901
Alignment:
Q  280 gcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgc 42333901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 480644 - 480582
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 480582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 398597 - 398659
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 398659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 34948945 - 34948883
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgc 34948883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 13837798 - 13837862
Alignment:
Q  256 tctcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttg 320  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||||||    
T  13837798 tctcatgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 18339106 - 18339148
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 18339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 28996730 - 28996772
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgc 28996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    |||||||||||||||||||||||||||||||||||||    
T  13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 31028531 - 31028489
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||| ||||| |||||| |||||||||||||||||||    
T  31028531 ggcgaccccgagcggttgcccggactcgatcgataatttttgc 31028489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 29743289 - 29743325
Alignment:
Q  285 cccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||| |||||||||| |||||||||||||||    
T  29743289 cccgggcggttgcccgggctcaatcgataatttttgc 29743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 34385555 - 34385519
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataat 315  Q
    |||||||||||||||| |||| |||||||||||||||    
T  34385555 ggcgaccccgggcggttgccctggctcgatcgataat 34385519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 22968631 - 22968569
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgc 22968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 19390125 - 19390188
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19390125 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgc 19390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 39771769 - 39771832
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39771769 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 39771832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 34084305 - 34084247
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgc 34084247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 6269614 - 6269551
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||    
T  6269614 tcatgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgc 6269551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 6503756 - 6503694
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||  |||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgc 6503694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 45182981 - 45183023
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 45183023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 6931061 - 6931019
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgc 6931019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 11018399 - 11018337
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||  |||||  |||||| |||||||||||||| |||||||||||||||||||||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgc 11018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 22922141 - 22922199
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgc 22922199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 33040953 - 33040995
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgc 33040995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 40081922 - 40081865
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttg 320  Q
    ||||||||||||||| ||||||| | ||  |||||||||||||||||||||||||||||    
T  40081922 gggcggttctaccgtatggcgactctgga-ggtcgcccgggctcgatcgataatttttg 40081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 6890998 - 6891035
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatt 316  Q
    |||||| |||||||||||||||||||||||||||||||    
T  6890998 ggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 5354709 - 5354748
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttt 318  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  5354709 ggcgaccccgggcggtcgcccgggctcgatccttaatttt 5354748  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 27935177 - 27935220
Alignment:
Q  278 tggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||| |||| |||| |||||||||||||||||||||||||||||    
T  27935177 tggcaaccctgggcagtcgcccgggctcgatcgataatttttgc 27935220  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 35514266 - 35514305
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttt 318  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  35514266 ggcgaccccggacggtcgtccgggctcgatcgataatttt 35514305  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 19565668 - 19565626
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||| |||||||||||||||||| || |||||||||||||||    
T  19565668 ggcgatcccgggcggtcgcccgggttcaatcgataatttttgc 19565626  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 45335875 - 45335915
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataattttt 319  Q
    ||||||| ||||||||||||||| ||| |||||||||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataattttt 45335915  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 39914494 - 39914557
Alignment:
Q  258 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39914494 tcatggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 39914557  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 15838270 - 15838328
Alignment:
Q  263 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgc 15838328  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 29728570 - 29728511
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| ||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgc 29728511  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 34137012 - 34136950
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||| ||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgc 34136950  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 4404008 - 4404050
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgc 4404050  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 16788188 - 16788150
Alignment:
Q  283 accccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttgc 16788150  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 23402108 - 23402150
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgc 23402150  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 36408551 - 36408593
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgc 36408593  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 3648978 - 3648921
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataattttt 319  Q
    ||||||||||||||| |||||| || || | |||||||||||||||||||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttt 3648921  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 2729363 - 2729323
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataattttt 319  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataattttt 2729323  T

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Target: scaffold2142 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 502 - 564
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgc 564  T

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Target: scaffold0069 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 17822 - 17884
Alignment:
Q  259 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgc 17884  T

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Target: scaffold0502 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 5230 - 5272
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 5272  T

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Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 31480 - 31522
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 321  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  31480 ggcgaccccagacggtcgcccgggctcgatcgataatttttgc 31522  T

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Target: scaffold0769 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 1260 - 1307
Alignment:
Q  262 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggctcgatc 309  Q
    |||||||| |||||   |||||||||||||||||||||||||||||||    
T  1260 gggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatc 1307  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 309
Target Start/End: Original strand, 194028 - 194058
Alignment:
Q  279 ggcgaccccgggcggtcgcccgggctcgatc 309  Q
    |||||||||||||||||||||||||||||||    
T  194028 ggcgaccccgggcggtcgcccgggctcgatc 194058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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