View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18330_low_19 (Length: 289)

Name: NF18330_low_19
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18330_low_19
NF18330_low_19
[»] chr8 (7 HSPs)
chr8 (18-271)||(27768892-27769147)
chr8 (18-98)||(9305232-9305313)
chr8 (28-98)||(35163040-35163111)
chr8 (28-98)||(29525878-29525950)
chr8 (28-98)||(41774952-41775023)
chr8 (28-97)||(30233813-30233883)
chr8 (18-62)||(36676335-36676380)
[»] chr5 (6 HSPs)
chr5 (28-98)||(43146357-43146427)
chr5 (19-98)||(29668518-29668598)
chr5 (18-98)||(20256949-20257032)
chr5 (28-98)||(38088988-38089058)
chr5 (18-98)||(2134751-2134833)
chr5 (28-87)||(24147111-24147171)
[»] chr2 (4 HSPs)
chr2 (18-98)||(18058823-18058905)
chr2 (28-98)||(39822906-39822977)
chr2 (18-84)||(5737261-5737328)
chr2 (45-98)||(25628924-25628977)
[»] chr3 (4 HSPs)
chr3 (18-98)||(49323177-49323258)
chr3 (18-98)||(3984485-3984566)
chr3 (18-98)||(35637218-35637300)
chr3 (18-85)||(2663289-2663358)
[»] chr1 (6 HSPs)
chr1 (18-85)||(36384319-36384387)
chr1 (19-92)||(41677789-41677864)
chr1 (18-98)||(47459116-47459195)
chr1 (19-98)||(19563408-19563487)
chr1 (18-98)||(43824247-43824330)
chr1 (29-72)||(37028636-37028679)
[»] chr4 (3 HSPs)
chr4 (18-98)||(50470055-50470137)
chr4 (28-98)||(31799287-31799358)
chr4 (18-71)||(42171233-42171286)
[»] chr7 (2 HSPs)
chr7 (19-98)||(24879081-24879162)
chr7 (19-98)||(48065001-48065082)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 27768892 - 27769147
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatactttttta-aagttaataacatgtctcatatttttgacctttattgcaattt 115  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||  |||||||||||||||    
T  27768892 gaaccacccaccaccatttatatttccatttccttaattaaaatcatatttttttttaagttaataacatgtgtcatatttttcgcctttattgcaattt 27768991  T
Q  116 tctgactttctgtcactacccattctataccatatgggttgctcaaaactttcttcatagacaaacaagtagtctgttaaatagactgaaaacagtttat 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27768992 tctgactttctgtcactacccattctataccatatgggttgcccaaaactttcttcatagacaaacaagtagtctgttaaatagactgaaaacagtttat 27769091  T
Q  216 agttgcaccgttcatttttaaaaagtccattaagaattgtaacatgattgcgtttt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27769092 agttgcaccgttcatttttaaaaagtccattaagaattgtaacatgattgcgtttt 27769147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9305232 - 9305313
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  9305232 gaaccacccaccaccatttatgtttttatttccttaattaaaatcacacttttttaaagttaataacatgtgtcatattttt 9305313  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 35163111 - 35163040
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  35163111 caccatttatgtttccatttccttaattaaaatcacactttttttaaagttaataacatgtgtcatattttt 35163040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 29525878 - 29525950
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcata--cttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||||||    
T  29525878 caccatttatgtttccatttccttaattaaaatcacactcttttttaaagttaataacatgtgtcatattttt 29525950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 41774952 - 41775023
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||| |||| |||||    
T  41774952 caccatttatgtttccatttccttaattaaaataacactttttttaaagtaaataacatgtgtcattttttt 41775023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 30233813 - 30233883
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatatttt 97  Q
    |||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||| |||| ||||    
T  30233813 caccatttatgttttcatttcattaattaaaatcacactttttttaaagttaataacatgtgtcatttttt 30233883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 36676380 - 36676335
Alignment:
Q  18 gaaccaccca-caccatttatgtttccatttccttaattaaaatca 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  36676380 gaaccacccatcaccatttatgtttccatttccttaattaaaatca 36676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 43146357 - 43146427
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  43146357 caccatttacgtttccatttccttaattaaaatcacacttttttaaagttaataacatgtgtcatattttt 43146427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 29668518 - 29668598
Alignment:
Q  19 aaccacccacaccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||    
T  29668518 aaccacccccactatttatgtttccatttccttaattaaaatcacactttttttaaagttaacaacatgtgtcatattttt 29668598  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20257032 - 20256949
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac--ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||| ||  |||||||||||||||||||||| ||||||||||    
T  20257032 gaaccacccaccaccatttatgtttccatttccttagctaaaatcacacttttttttaaagttaataacatgtgtcatattttt 20256949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 38088988 - 38089058
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    |||||||||||||| |||||||||||||||||||| | |||||| || |||||||||||| ||||||||||    
T  38088988 caccatttatgttttcatttccttaattaaaatcacattttttttaaattaataacatgtgtcatattttt 38089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 2134751 - 2134833
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||| || |||||||||||||| ||||||| |||| |||||    
T  2134751 gaaccacccaccaccatttatgttttcatttccttgattaaaatcacactttttttaaagttaagaacatgtgtcattttttt 2134833  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 24147171 - 24147111
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgt 87  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||    
T  24147171 caccatttatgtttccatttacttaattaaaatcacactttttttaaacttaataacatgt 24147111  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 18058905 - 18058823
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttt-tttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  18058905 gaaccacccaccaccatttatgtttccatttccttaattaaaatcacactttatttaaagttaataacatgtgtcatattttt 18058823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 39822906 - 39822977
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||| ||||||||||    
T  39822906 caccatttatgtttccattttcttaattaaaatcacactttttttaaatttaataacatgtgtcatattttt 39822977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 5737328 - 5737261
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttttttaaagttaataaca 84  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  5737328 gaaccacccaccaccatttacgtttccatttccttaatgaaaatcactcttttttaaagttaataaca 5737261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25628977 - 25628924
Alignment:
Q  45 tttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||||||||   || |||||||||||||||| |||| ||||||||||    
T  25628977 tttccttaattaaaatttcacctttttaaagttaataatatgtatcatattttt 25628924  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 49323177 - 49323258
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||||    
T  49323177 gaaccacccaccaccatttatgtttccatttccttaattaaaatcacacttttttaaagttaacaacatgtgtcatcttttt 49323258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 3984566 - 3984485
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||    
T  3984566 gaaccacccaccaccatttatgtttctatttccttagttaaaatcacacttttttaaagttaataacatgtgtcattttttt 3984485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 35637218 - 35637300
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||    
T  35637218 gaaccacccaccactatttatgtttccatttcctaaattaaaatcacactttttttaaagttaataacatgtgtcatattttt 35637300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2663358 - 2663289
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacat 85  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2663358 gaaccacccaccaccatttatgtttccatttccttaattaaaatcacactttttttaaagttaataacat 2663289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36384319 - 36384387
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacat 85  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36384319 gaaccacccaccatcatttatgtttccatttccttaattaaaatcacacttttttaaagttaataacat 36384387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 41677864 - 41677789
Alignment:
Q  19 aaccacccac-accatttatgtttccatttccttaattaaaatcata-cttttttaaagttaataacatgtctcat 92  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  41677864 aaccacccaccaccatttatgtttccatttccttaattaaaatcatatattttttaaagttaataacatgtatcat 41677789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 47459116 - 47459195
Alignment:
Q  18 gaaccacccacaccatttatgtttccatttccttaattaaaatcatacttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||  || ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||| |||||    
T  47459116 gaaccaccatcatcatttatgtttccatttccttaattaaaatca-ctttttttaaagttaataacatgtgtcattttttt 47459195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 19563487 - 19563408
Alignment:
Q  19 aaccacccac-accatttatgtttccatttccttaattaaaatcatactttttt-aaagttaataacatgtctcatattttt 98  Q
    |||||||||| ||||||||||||| |||||||||||||||||||  |||||||| ||||||||||| |||| ||||||||||    
T  19563487 aaccacccaccaccatttatgttttcatttccttaattaaaatc--acttttttaaaagttaataatatgtgtcatattttt 19563408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 43824330 - 43824247
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac---ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||   |||||||||||||||||||||| |||| |||||    
T  43824330 gaaccacccaccaccatttatgttttcatttccttaattaaaatca-acattttttttaaagttaataacatgtgtcattttttt 43824247  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 37028679 - 37028636
Alignment:
Q  29 accatttatgtttccatttccttaattaaaatcatactttttta 72  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||    
T  37028679 accatttttgtttctatttccttaattaaaatcacactttttta 37028636  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 50470137 - 50470055
Alignment:
Q  18 gaaccacccac-accatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||| ||||||||||    
T  50470137 gaaccacccaccaccatttatgtttccatttccttaaataaaattacactttttttaaagttaataacatgtgtcatattttt 50470055  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 31799287 - 31799358
Alignment:
Q  28 caccatttatgtttccatttccttaattaaaatcatac-ttttttaaagttaataacatgtctcatattttt 98  Q
    |||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||| |||| |||||    
T  31799287 caccatttatgttttcatttctttaattaaaatcacactttttttaaagttaataacatgtgtcattttttt 31799358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 42171233 - 42171286
Alignment:
Q  18 gaaccacccacaccatttatgtttccatttccttaattaaaatcatactttttt 71  Q
    ||||| ||||||||||| |||||| ||||| |||||||||||||| ||||||||    
T  42171233 gaaccgcccacaccattcatgttttcattttcttaattaaaatcacactttttt 42171286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 24879081 - 24879162
Alignment:
Q  19 aaccacccac-accatttatgtttccatttccttaattaaaatcata-cttttttaaagttaataacatgtctcatattttt 98  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| | ||||||||||    
T  24879081 aaccacccaccaccatttatgtttccatttccttaattaaaatcacattttttttaaagttaataacatatgtcatattttt 24879162  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 48065001 - 48065082
Alignment:
Q  19 aaccacccac-accatttatgtttccatttccttaattaaaatcatactttt-ttaaagttaataacatgtctcatattttt 98  Q
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T  48065001 aaccacccaccaccgtttatgtttccatttcctcaagtaaaatcaaactttttttaaagttaataacatgtgtcatattttt 48065082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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