View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18330_low_2 (Length: 653)

Name: NF18330_low_2
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18330_low_2
NF18330_low_2
[»] chr2 (3 HSPs)
chr2 (213-641)||(4378931-4379360)
chr2 (14-151)||(4378734-4378869)
chr2 (563-592)||(37812284-37812313)
[»] chr3 (2 HSPs)
chr3 (570-610)||(48505083-48505123)
chr3 (570-610)||(45941116-45941156)
[»] chr1 (1 HSPs)
chr1 (559-609)||(32752358-32752408)
[»] chr7 (2 HSPs)
chr7 (563-597)||(41710092-41710126)
chr7 (571-611)||(43295521-43295561)
[»] chr4 (3 HSPs)
chr4 (563-609)||(27117209-27117255)
chr4 (559-592)||(39910417-39910450)
chr4 (570-598)||(28232097-28232125)
[»] chr8 (1 HSPs)
chr8 (85-134)||(31714671-31714718)
[»] chr6 (1 HSPs)
chr6 (577-609)||(20864673-20864705)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 213 - 641
Target Start/End: Original strand, 4378931 - 4379360
Alignment:
Q  213 cgtgcatggtggactttatagcagaggatcaaggccctgtcttgtgtacagaagtaaaagtaataaattaatggcatcatacagacaataacaggtaaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4378931 cgtgcatggtggactttatagcagaggatcaaggccctgtcttctgtacagaagtaaaagtaataaattaatggcatcatacagacagtaacaggtaaag 4379030  T
Q  313 gtagaatgggtatcagcaaagcaatgccttcatctttatggatatgtttagtacggatttatagctagttttccttcattattattgttgtcaaaagtac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4379031 gtagaatgggtatcagcaaagcaatgccttcatctttatggatatgtttagtacggatttatagctagtttttcttcattattattgttgtcaaaagtac 4379130  T
Q  413 atttacgtgtgcacgttttgcacnnnnnnnnnnnnnnnnnctcctacttcttaattataatttccatccatttagtattagaagtcacagttatatt--- 509  Q
    |||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  4379131 atttacgtgtgcacgttttgcactttttttagggttttttctcctacttcttaattataatttccatccatttagtattagaagtcacagttatattgat 4379230  T
Q  510 --gatcctattgnnnnnnnctcgagtcccatgttaaaagacacccattattttataagtcgattttgtaaggatgagttagacccaatatacaaacttaa 607  Q
      ||||||||||       |||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4379231 ccgatcctattgaaaaaaactcgagtcccatgttaa---acacccattattttataagtcgattttgtaagaatgagttaaacccaatatacaaacttaa 4379327  T
Q  608 taatcatatcctgtaattttaattgctgatattg 641  Q
    ||||||||||| ||||||||||||||||||||||    
T  4379328 taatcatatcc-gtaattttaattgctgatattg 4379360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 4378734 - 4378869
Alignment:
Q  14 agagaggaagaggtcatcacacacagtgacttgacagaaaaaagaagaacaagttgaagttgaactacagtgtgtggtccatgaagaaaacttaagtgat 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4378734 agagaggaagaggtca-cacacacagtgacttgacagaaaaaagaagaacaagttgaagttgaactacagtgtgtggtccatgaagaaaactt-agtgat 4378831  T
Q  114 tttagtctcatttttggtgcagacagaacggtgggaac 151  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4378832 tttagtctcatttttggtgcagacagaacggtgggaac 4378869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 592
Target Start/End: Complemental strand, 37812313 - 37812284
Alignment:
Q  563 aagtcgattttgtaaggatgagttagaccc 592  Q
    ||||||||||||||||||||||||||||||    
T  37812313 aagtcgattttgtaaggatgagttagaccc 37812284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 610
Target Start/End: Original strand, 48505083 - 48505123
Alignment:
Q  570 ttttgtaaggatgagttagacccaatatacaaacttaataa 610  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  48505083 ttttgtaaggatgagttagacccaatataaaaacttaataa 48505123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 610
Target Start/End: Complemental strand, 45941156 - 45941116
Alignment:
Q  570 ttttgtaaggatgagttagacccaatatacaaacttaataa 610  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  45941156 ttttgtaaggatgagttagacccaatctaaaaacttaataa 45941116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 609
Target Start/End: Complemental strand, 32752408 - 32752358
Alignment:
Q  559 ttataagtcgattttgtaaggatgagttagacccaatatacaaacttaata 609  Q
    ||||||| || |||||||||||||||||||||||| ||||||||| |||||    
T  32752408 ttataagccggttttgtaaggatgagttagacccattatacaaacataata 32752358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 597
Target Start/End: Original strand, 41710092 - 41710126
Alignment:
Q  563 aagtcgattttgtaaggatgagttagacccaatat 597  Q
    |||||||||||||||||||||||||| ||||||||    
T  41710092 aagtcgattttgtaaggatgagttaggcccaatat 41710126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 611
Target Start/End: Original strand, 43295521 - 43295561
Alignment:
Q  571 tttgtaaggatgagttagacccaatatacaaacttaataat 611  Q
    |||||||||||||||||| ||||||||| |||| |||||||    
T  43295521 tttgtaaggatgagttaggcccaatataaaaacctaataat 43295561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 27117255 - 27117209
Alignment:
Q  563 aagtcgattttgtaaggatgagttagacccaatatacaaacttaata 609  Q
    |||||| |||||||||||||||||||||||| |||| |||| |||||    
T  27117255 aagtcggttttgtaaggatgagttagacccattataaaaacctaata 27117209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 592
Target Start/End: Complemental strand, 39910450 - 39910417
Alignment:
Q  559 ttataagtcgattttgtaaggatgagttagaccc 592  Q
    |||||| |||||||||||||||||||||||||||    
T  39910450 ttataaatcgattttgtaaggatgagttagaccc 39910417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 598
Target Start/End: Complemental strand, 28232125 - 28232097
Alignment:
Q  570 ttttgtaaggatgagttagacccaatata 598  Q
    |||||||||||||||||||||||||||||    
T  28232125 ttttgtaaggatgagttagacccaatata 28232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 31714671 - 31714718
Alignment:
Q  85 gtgtggtccatgaagaaaacttaagtgattttagtctcatttttggtgca 134  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  31714671 gtgtggtccatga-gaaaacttat-tgattttagtctcatttttggtgca 31714718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 609
Target Start/End: Complemental strand, 20864705 - 20864673
Alignment:
Q  577 aggatgagttagacccaatatacaaacttaata 609  Q
    |||||||||||||||||||||| ||||||||||    
T  20864705 aggatgagttagacccaatataaaaacttaata 20864673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University