View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18330_low_22 (Length: 247)
Name: NF18330_low_22
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2151256 - 2151023
Alignment:
| Q |
1 |
ataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccatttgacaagtctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151256 |
ataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacataggcaaacaacttggagaagagctggccgatccatttgacaagtctaa |
2151157 |
T |
|
| Q |
101 |
atttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151156 |
atttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaat |
2151057 |
T |
|
| Q |
201 |
tcttttgtctacatattcaaagccacacaagtga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2151056 |
tcttttgtctacatattcaaagccacacaagtga |
2151023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 2163529 - 2163301
Alignment:
| Q |
6 |
tttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatttc |
105 |
Q |
| |
|
||||| ||||||||||||||||| ||| || | |||||||| |||| || |||||||||| ||||| ||| |||| ||||||||||| |||| | |
|
|
| T |
2163529 |
tttgttactgtcaaggattttgccgaagcatttcagatatttcacataggtcaaaaacttggagatgagctagccaatccttttgacaagtcgaaatgcc |
2163430 |
T |
|
| Q |
106 |
attcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaattcttt |
205 |
Q |
| |
|
|| ||| |||||||| |||||||||||| || |||||||||||||||| || | |||||||||||||||||| || |||||||||||| ||||||| || |
|
|
| T |
2163429 |
atgcaagtgtcttgaccacaaagaaatacggtgttaacaagaaggagcttctgaaggcttgtgctagcagagaatttttgcttatgaagcgaaattcgtt |
2163330 |
T |
|
| Q |
206 |
tgtctacatattcaaagccacacaagtga |
234 |
Q |
| |
|
|||| |||| ||||||| ||| ||||||| |
|
|
| T |
2163329 |
tgtccacattttcaaagtcactcaagtga |
2163301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 4302471 - 4302604
Alignment:
| Q |
61 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaag |
160 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||| || ||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| || | |
|
|
| T |
4302471 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaagaatgagcttctgaa |
4302570 |
T |
|
| Q |
161 |
ggcttgtgctagcagagagttattgcttatgaag |
194 |
Q |
| |
|
|||||||||||| | ||| || |||||||||||| |
|
|
| T |
4302571 |
ggcttgtgctagtatagaatttttgcttatgaag |
4302604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University