View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_24 (Length: 239)
Name: NF18330_low_24
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3014315 - 3014093
Alignment:
| Q |
1 |
aacaatgctttacgaaatggagcattaggacatgttttccagtcatgaatcatgtcgatcttattcaaggcaaggatgaattgtttgttggtgattttta |
100 |
Q |
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| T |
3014315 |
aacaatgctttacgaaaaggagcattaggacatgttttccagtcatgaatcatgtcgatcttattcaaggcaaggatgaattgtttgttggtgagtttta |
3014216 |
T |
|
| Q |
101 |
atagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctgaatgg |
200 |
Q |
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| T |
3014215 |
atagatcgagtaagtctatagtatgtgggtgtaagccatcatcatgcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctgaatgg |
3014116 |
T |
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| Q |
201 |
tgtgttatcaagaaccagcatac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3014115 |
tgtgttatcaagaaccagcatac |
3014093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 593533 - 593650
Alignment:
| Q |
60 |
cttattcaaggcaaggatgaattgtttgttggtgatttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaaca |
159 |
Q |
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| T |
593533 |
cttattcaagacaatgatgaagtctgtgttggtcctttttaatagatcgagtgaatctatagtttgttgctgtatgccat------gcataatgtctaca |
593626 |
T |
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| Q |
160 |
accaaaatagcaatatcacataga |
183 |
Q |
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|||||||| || |||||||||||| |
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| T |
593627 |
accaaaattgcgatatcacataga |
593650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 182507 - 182467
Alignment:
| Q |
143 |
catgcataatgtcaacaaccaaaatagcaatatcacataga |
183 |
Q |
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| T |
182507 |
catgcataatatctacaaccaaaattgcaatatcacataga |
182467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 29220021 - 29220057
Alignment:
| Q |
6 |
tgctttacgaaatggagcattaggacatgttttccag |
42 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
29220021 |
tgctttacaaattggagcattaggacatgttttccag |
29220057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 40672383 - 40672600
Alignment:
| Q |
3 |
caatgctttacgaaatggagcattaggacatgttttccagtcatgaatcatgtcgatcttattcaaggcaaggatgaattgtttgttggtgatttttaat |
102 |
Q |
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| T |
40672383 |
caatgctttacgaaatggagcattgggacatgttttccagtgatgaatcatgtcgaccatattcaaggcaacaatgaattgtttgttggtagtttttaat |
40672482 |
T |
|
| Q |
103 |
agatcaagtaagtctatagtatgtggctgtaagccatc------atcatgcataatgtcaacaaccaaaatagcaatatcacatagatataagcccctga |
196 |
Q |
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|||| ||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
40672483 |
agattgagtgagtc---------tgggtgtaagccatcatcatgatcatgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccctaa |
40672573 |
T |
|
| Q |
197 |
atggtgtgttatcaagaaccagcatac |
223 |
Q |
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||||| |||||||| ||||||||||| |
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| T |
40672574 |
ttggtgcgttatcaacaaccagcatac |
40672600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 44605098 - 44605015
Alignment:
| Q |
94 |
atttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaacaaccaaaatagcaatatcacataga |
183 |
Q |
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| T |
44605098 |
atttttaatagattgagtgactctatagtttgtggctctaagccat------gcataatgtcaacaaccaaaattgcaatatcacataga |
44605015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 44626897 - 44626780
Alignment:
| Q |
60 |
cttattcaaggcaaggatgaattgtttgttggtgatttttaatagatcaagtaagtctatagtatgtggctgtaagccatcatcatgcataatgtcaaca |
159 |
Q |
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||||||||| |||| |||||||| |||| | ||||||||||||| ||| | |||||||| ||||||| |||||||| |||||||||| ||| |
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| T |
44626897 |
cttattcaatgcaacgatgaattcagtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccat------gcataatgtccaca |
44626804 |
T |
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| Q |
160 |
accaaaatagcaatatcacataga |
183 |
Q |
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|||||||| ||||||||||||||| |
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| T |
44626803 |
accaaaattgcaatatcacataga |
44626780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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