View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18330_low_3 (Length: 621)

Name: NF18330_low_3
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18330_low_3
NF18330_low_3
[»] chr1 (23 HSPs)
chr1 (12-606)||(15243815-15244410)
chr1 (421-606)||(47900693-47900878)
chr1 (452-607)||(19705396-19705551)
chr1 (15-286)||(39440525-39440795)
chr1 (74-182)||(1972116-1972224)
chr1 (63-182)||(26099888-26100006)
chr1 (410-582)||(15877232-15877404)
chr1 (30-182)||(19709223-19709375)
chr1 (63-289)||(47900273-47900500)
chr1 (408-563)||(33078309-33078464)
chr1 (28-286)||(6240994-6241253)
chr1 (409-524)||(23412470-23412585)
chr1 (476-570)||(6240631-6240725)
chr1 (129-194)||(15731390-15731455)
chr1 (86-183)||(33078816-33078912)
chr1 (452-604)||(19708137-19708289)
chr1 (141-194)||(26780495-26780548)
chr1 (20-123)||(15731835-15731938)
chr1 (438-493)||(26780913-26780968)
chr1 (237-279)||(1972018-1972060)
chr1 (145-194)||(21501895-21501944)
chr1 (238-286)||(19709118-19709166)
chr1 (250-286)||(33078713-33078749)
[»] chr4 (15 HSPs)
chr4 (356-577)||(7355289-7355510)
chr4 (408-583)||(10178839-10179014)
chr4 (408-606)||(4224786-4224984)
chr4 (410-598)||(19943447-19943635)
chr4 (10-220)||(12109953-12110164)
chr4 (35-182)||(50688483-50688630)
chr4 (15-194)||(10179277-10179455)
chr4 (408-523)||(37239382-37239496)
chr4 (85-286)||(4225232-4225433)
chr4 (12-187)||(7354895-7355070)
chr4 (96-182)||(30500428-30500514)
chr4 (438-530)||(22271132-22271224)
chr4 (457-582)||(39327823-39327948)
chr4 (439-493)||(51461098-51461152)
chr4 (139-175)||(19941017-19941053)
[»] chr7 (22 HSPs)
chr7 (332-604)||(2478465-2478736)
chr7 (12-286)||(984109-984383)
chr7 (15-182)||(2476677-2476844)
chr7 (311-606)||(26573126-26573409)
chr7 (410-583)||(12866110-12866283)
chr7 (445-598)||(23103086-23103239)
chr7 (433-604)||(1781357-1781528)
chr7 (421-562)||(983705-983846)
chr7 (12-279)||(16803412-16803676)
chr7 (12-280)||(26572699-26572971)
chr7 (410-604)||(8859476-8859670)
chr7 (73-273)||(12865731-12865932)
chr7 (10-281)||(29542125-29542395)
chr7 (445-583)||(8858844-8858982)
chr7 (445-604)||(8875847-8876005)
chr7 (82-177)||(8876424-8876519)
chr7 (433-598)||(16803075-16803236)
chr7 (452-598)||(7228050-7228197)
chr7 (438-571)||(25992364-25992497)
chr7 (232-284)||(7228498-7228550)
chr7 (440-519)||(19856880-19856959)
chr7 (12-70)||(5057101-5057159)
[»] chr2 (12 HSPs)
chr2 (15-273)||(27467289-27467547)
chr2 (408-578)||(17558787-17558957)
chr2 (420-606)||(27467814-27467997)
chr2 (439-603)||(25677459-25677623)
chr2 (64-184)||(17558388-17558508)
chr2 (439-598)||(24927840-24927999)
chr2 (139-194)||(25895373-25895428)
chr2 (12-182)||(9789868-9790038)
chr2 (133-196)||(5369920-5369983)
chr2 (140-183)||(21822502-21822545)
chr2 (445-504)||(33856447-33856506)
chr2 (142-183)||(33856015-33856056)
[»] chr5 (9 HSPs)
chr5 (408-602)||(17468371-17468564)
chr5 (12-194)||(17468840-17469021)
chr5 (450-603)||(15608272-15608425)
chr5 (12-182)||(23361421-23361590)
chr5 (523-574)||(23360907-23360958)
chr5 (474-598)||(16510554-16510678)
chr5 (408-484)||(43582553-43582629)
chr5 (438-573)||(27892825-27892959)
chr5 (12-44)||(16511191-16511223)
[»] chr3 (10 HSPs)
chr3 (410-600)||(861889-862077)
chr3 (113-286)||(862324-862497)
chr3 (471-600)||(27902657-27902788)
chr3 (408-571)||(48559328-48559491)
chr3 (12-185)||(48559107-48559280)
chr3 (147-183)||(4287889-4287925)
chr3 (98-182)||(32090626-32090710)
chr3 (532-598)||(4288318-4288384)
chr3 (129-179)||(7720872-7720922)
chr3 (445-493)||(4288230-4288278)
[»] chr8 (13 HSPs)
chr8 (408-598)||(30122866-30123055)
chr8 (12-182)||(19452541-19452711)
chr8 (12-182)||(19528365-19528535)
chr8 (468-604)||(7634610-7634746)
chr8 (12-146)||(30122385-30122520)
chr8 (12-153)||(13217878-13218019)
chr8 (190-286)||(30122524-30122620)
chr8 (236-282)||(7635064-7635110)
chr8 (438-491)||(22541133-22541186)
chr8 (237-286)||(25233536-25233585)
chr8 (15-102)||(37379023-37379110)
chr8 (486-604)||(29452868-29452986)
chr8 (237-282)||(13218105-13218150)
[»] chr6 (2 HSPs)
chr6 (12-286)||(14274596-14274871)
chr6 (348-579)||(14274183-14274414)
[»] scaffold0037 (1 HSPs)
scaffold0037 (438-510)||(107643-107715)
[»] scaffold0004 (2 HSPs)
scaffold0004 (409-476)||(119144-119211)
scaffold0004 (68-182)||(119573-119686)


Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 12 - 606
Target Start/End: Complemental strand, 15244410 - 15243815
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15244410 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagattacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 15244311  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggcca 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| | || |||||||||    
T  15244310 ctagctctaaataattgagaactagctctcatgctcatctatagagaagatgagatggagtgagaactctagtgctgctaaccatagctgaacttggcca 15244211  T
Q  212 ctcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaaccattaagcaaagataaacgagaccgta 311  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15244210 ctcaattcaag--tgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaaccattaagcaaagataaacgggaccgta 15244113  T
Q  312 tga---gttcgtaaatagtacgacccggatgacgatctagtatgctgcatcttcctatatcttcagatatgcaacttcaattccaatttgttgcgcccga 408  Q
    |||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  15244112 tgatcagttcgtaaatagtacgacccggatgacgatctagtatgctacatcttcctatatcttgagatatacaacttcaattccaatttgttgcgcccga 15244013  T
Q  409 gatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccata 508  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15244012 gatctccagtgccattcttcaccctgttccatcaatcatccaaaacaagcattactagttcaaaatgatcaaataacactaaaaattaattaaaaccata 15243913  T
Q  509 aatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 606  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  15243912 aattcctaaatagtcactgattagatgttttaggtcatgcattcactcaatttcttgttcattatgggggataagtgtaacatgataacctacaaatt 15243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 421 - 606
Target Start/End: Original strand, 47900693 - 47900878
Alignment:
Q  421 cattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaata 520  Q
    ||||||||| |  |||||||||  ||||  |||||| |||||||| || ||||||||||||  | |||||||| |||||||||| ||||||| |||||||    
T  47900693 cattcttcatcacgttccatcagacatcttaaacaaacattactaatttaaaatgatcaaactacactaaaaactaattaaaacaataaattcctaaata 47900792  T
Q  521 gtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 606  Q
    |||  ||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||| | ||| ||||||||||||||||    
T  47900793 gtcggtgattagatgttttagttcatgcattcactcattttctcgttcattataggggataagtgcaacgtgataacctacaaatt 47900878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 452 - 607
Target Start/End: Complemental strand, 19705551 - 19705396
Alignment:
Q  452 aacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcatt 551  Q
    |||||||||||||||||||||||||| |||||| ||||||| ||| | | ||||||||| | |||||||||||||||||  ||||| |||| |||||||     
T  19705551 aacaagcattactagttcaaaatgattaaataacactaaaagttactcacaaccataaactcctaaatagtcactgattatatgttataggccatgcata 19705452  T
Q  552 cactcaatttctcgttcattatgggggataagagtaacatgataacctacaaattg 607  Q
    ||||||||||||| |   |||||||||||||| | || ||||||||||||||||||    
T  19705451 cactcaatttctcataggttatgggggataagtgcaaaatgataacctacaaattg 19705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 39440525 - 39440795
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||||||| |||||||| || || || |||| ||||||||    ||||  |||||||||| ||| ||||||| |  ||||||||    
T  39440525 aaaacatgaaaaactaaattgatatataaaataaagctagtacaagattacaatccttgtaggagagaggtgagctaaaaacatcacc-acgtaatccta 39440623  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggccact 213  Q
    ||||||| | | | |||| || | |||||||||||||||  ||||||||| ||| ||||| ||||||| |||| |||||| |   ||| |||||| | ||    
T  39440624 actctaatttactaagaaataacactcatgctcatctatggagaagatgatatgaagtgaaaactctagtgctcctaaccctaactggaacttggtctct 39440723  T
Q  214 caattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||    ||||| ||| |  ||||||||  |||||||||||||||||||||||||||  ||| |||||||    
T  39440724 caattc-gttgtgtaaaatatcggacccttgacactaacatgtggttgtccttttatagtataagaccaacca 39440795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 1972224 - 1972116
Alignment:
Q  74 aaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtg 173  Q
    |||||| ||||||||||| || ||||||| || ||||||||||||||  ||  | ||||||||| ||||||||||||||| |||||||||||||| ||||    
T  1972224 aaggaaagaggtgagcttgaagcatcaccaaagtaatcctaactctagttatctaagaactagcactcatgctcatctatgaagaagatgagatgaagtg 1972125  T
Q  174 agaactcta 182  Q
    | |||||||    
T  1972124 acaactcta 1972116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 26100006 - 26099888
Alignment:
Q  63 tacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagat 162  Q
    |||| |||||||| ||| |||||||||||||| ||||||| || ||||  ||||||||| | | | ||||||||| ||||||||||||||| | ||||||    
T  26100006 tacactccacaaatgaaagaggtgagcttaaa-catcaccaaagtaattataactctaattcactaagaactagcactcatgctcatctatgaggaagat 26099908  T
Q  163 gagatggagtgagaactcta 182  Q
    ||||||||| ||||||||||    
T  26099907 gagatggagggagaactcta 26099888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 582
Target Start/End: Complemental strand, 15877404 - 15877232
Alignment:
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    |||||||| ||||||| ||| | |||   ||||| |||||| ||||| |||||||||||||||||||| || ||| |||||||| || ||||| | ||||    
T  15877404 atctccagagccattcctcatcatgtataatcaaacatccacaacaatcattactagttcaaaatgattaattaacactaaaaactacttaaagctataa 15877305  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataa 582  Q
    | | ||| | || |||||||| |||| ||||||  ||||||||| | ||||| | |||||||||| |||||||    
T  15877304 aatcctagaaagccactgattagatgctttaggcaatgcattcattaaatttattgttcattatgtgggataa 15877232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 19709375 - 19709223
Alignment:
Q  30 aaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattga 129  Q
    ||||| |||||||||||| |||||| |  | | |||| ||||  || ||| |||| |||||| || |||||||||| ||||||||||| ||||| | | |    
T  19709375 aaattaatagataaaatagagttaagaacatattacactccaacaaagaaagaggcgagcttgaagcatcacctaagtaatcctaactttaaatcactaa 19709276  T
Q  130 gaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||| |||  |||||| |||||||  ||||||||||||||||||||||||||||    
T  19709275 gaagtagaactcatgttcatctaagaagaagatgagatggagtgagaactcta 19709223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 289
Target Start/End: Original strand, 47900273 - 47900500
Alignment:
Q  63 tacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagat 162  Q
    |||||||||  |||||| ||||||||| | || ||||||| ||||||| |||||||||| | | | ||| ||||   |||||||| |||||  |||||||    
T  47900273 tacaatccaagaaggaaagaggtgagcatgaagcatcacccaaataatactaactctaa-tcactaagacctagaattcatgctcgtctatggagaagat 47900371  T
Q  163 gagatggagtgagaactctaatgctactaaccatggttgg-acttggccactcaattcaagagtgtacaatttttgaccc-ttggtactaacatgtggtt 260  Q
    |||| ||||||||||| ||| ||||||| ||| | | ||| ||||| || |||||||||  |||||| ||||   ||||| |||  |||||||||| |||    
T  47900372 gagaaggagtgagaacgctagtgctactcaccctagatggaacttgaccgctcaattcacaagtgtaaaattcaggaccctttgacactaacatgttgtt 47900471  T
Q  261 gtccttttatagttcaaggccaaccatta 289  Q
    |||||||||||||  |||| |||||||||    
T  47900472 gtccttttatagtgtaaggtcaaccatta 47900500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 563
Target Start/End: Complemental strand, 33078464 - 33078309
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||| || ||||||| ||| | |||  |||||| ||| |||||||||||| | |||||||||||||  || ||| |||||||| ||||||||||  |    
T  33078464 agatctctagagccattcctcatcttgtatcatcaaacattcaaaacaagcatcattagttcaaaatgagtaattaacactaaaaactaattaaaactct 33078365  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttct 563  Q
    ||| | ||||||||||||||||| ||| |||||||  |  |||||| |||||||||    
T  33078364 aaaatcctaaatagtcactgattagatattttaggcaaaacattcattcaatttct 33078309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 286
Target Start/End: Complemental strand, 6241253 - 6240994
Alignment:
Q  28 ctaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataatt 127  Q
    ||||||||| ||||||||| |||||||||  | | |||||||||  ||||||  | |||||||| || |||||||||| ||| | |||||||   |  ||    
T  6241253 ctaaattgaaagataaaatgtagttaataacatattacaatccaagaaggaaatatgtgagctttaagcatcacctaagtaaccttaactcttttttttt 6241154  T
Q  128 gag-aactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggccactcaattcaagagt 225  Q
     || ||||||| | ||||||||| |||  ||||||||||||||||||||||||||| ||||  |||| || ||||| |||||| | |||||||| | | |    
T  6241153 aaggaactagcacacatgctcatatatgtagaagatgagatggagtgagaactctagtgctgttaactatagttggaacttggtcgctcaattc-acaat 6241055  T
Q  226 gtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||| ||||   ||| | | | |||| ||||||||||||| |||||||| ||||| ||||||    
T  6241054 gtaaaattcaggactcctagcactaccatgtggttgtccctttatagtacaaggtcaacca 6240994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 524
Target Start/End: Original strand, 23412470 - 23412585
Alignment:
Q  409 gatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccata 508  Q
    |||||||| ||| | |||||| | |||||||  || |||| | ||||| |||||||||||||||||||| |||||| |||||||||||  ||||| ||||    
T  23412470 gatctccaatgcaactcttcatcatgttccacaaaacatctataacaaccattactagttcaaaatgattaaataacactaaaaattatataaaatcata 23412569  T
Q  509 aatttctaaatagtca 524  Q
    |||| | |||||||||    
T  23412570 aattccaaaatagtca 23412585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 570
Target Start/End: Complemental strand, 6240725 - 6240631
Alignment:
Q  476 atcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcat 570  Q
    ||||||||| |||||||| |||||||| ||||||||  || |||||| ||||||| || | ||||||||||||||||| | |||||||| |||||    
T  6240725 atcaaataacactaaaaactaattaaacccataaatgcctgaatagttactgattagacgctttaggtcatgcattcatttaatttctcattcat 6240631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 15731455 - 15731390
Alignment:
Q  129 agaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||| | |||| ||||||    
T  15731455 agaactagcactcatgctcatctatggagaagatgagatggagtgagaactccagtgctgctaacc 15731390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 33078912 - 33078816
Alignment:
Q  86 gagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    ||||| ||| ||||||| || ||||||||||||||| | | | | ||||| | |||||||||||||||  |||||||||||||||||||| |||||||    
T  33078912 gagctaaaagcatcacc-aagtaatcctaactctaattcactaaaaactaacactcatgctcatctatggagaagatgagatggagtgagtactctaa 33078816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 604
Target Start/End: Complemental strand, 19708289 - 19708137
Alignment:
Q  452 aacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcatt 551  Q
    |||||||||||||||||||||||||| | |||| |||||||  || | |||||||| ||   |||||||||||||  ||  ||||| || |||||||||     
T  19708289 aacaagcattactagttcaaaatgattatataaaactaaaagctactcaaaaccatcaacccctaaatagtcactcgttatatgttatatgtcatgcata 19708190  T
Q  552 cactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 604  Q
    |||||| ||| || |  |||||| |||||||| | ||  || |||||||||||    
T  19708189 cactcagtttttcatagattatgtgggataagtgcaatgtggtaacctacaaa 19708137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 26780495 - 26780548
Alignment:
Q  141 catgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||||| |||  ||||||||||||||| |||||||||||| ||||||||||    
T  26780495 catgctcatttatggagaagatgagatggaatgagaactctaaagctactaacc 26780548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 15731938 - 15731835
Alignment:
Q  20 atgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactct 119  Q
    |||||||  ||||||||||||||| ||| ||||||||  | | ||||||| |  ||||||  |||||||||| || || || |||| |||||||||||||    
T  15731938 atgaaaagttaaattgatagataatatagagttaataacaaattacaatcaaacaaggaataaggtgagcttgaagcaacatctaagtaatcctaactct 15731839  T
Q  120 aaat 123  Q
    ||||    
T  15731838 aaat 15731835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 26780913 - 26780968
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaa 493  Q
    |||||| ||||||  ||||||||||||||||||||||||| || ||| ||||||||    
T  26780913 catcaaacatccaggacaagcattactagttcaaaatgattaattaacactaaaaa 26780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 1972060 - 1972018
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaagg 279  Q
    ||||||||  ||||||||||||||||||||||||||| |||||    
T  1972060 gacccttgacactaacatgtggttgtccttttatagtacaagg 1972018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 21501944 - 21501895
Alignment:
Q  145 ctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||||||  |||| ||||||||||||||||||||||| ||| ||||||    
T  21501944 ctcatctattcagaatatgagatggagtgagaactctaaagcttctaacc 21501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 19709166 - 19709118
Alignment:
Q  238 acccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    |||||| | ||||||||||||||||| ||||||||| ||||| ||||||    
T  19709166 acccttagcactaacatgtggttgtcattttatagtacaaggtcaacca 19709118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 33078749 - 33078713
Alignment:
Q  250 aacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  33078749 aacatgtggttgtccttttttagtacaaggccaacca 33078713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 356 - 577
Target Start/End: Original strand, 7355289 - 7355510
Alignment:
Q  356 catcttcctatatcttcagatatgcaacttcaattccaatttgttgcgcccgagatctccagtgccattcttcaccctgttccatcaaccatccaaaaca 455  Q
    ||||||| ||||||||||   ||||| |||||||||||  |||| || ||||||||||| |||||||||||||| | ||||||||||| ||||||||  |    
T  7355289 catcttcatatatcttcaatcatgcatcttcaattccacgttgtagctcccgagatctctagtgccattcttcagcgtgttccatcaaacatccaaacta 7355388  T
Q  456 agcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcact 555  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |  ||||||||||||    
T  7355389 agcattattagttcaaaatgatcaaataacactaaaaattaattaaaaccataaatttataaatagtcactgattagatgctttggaccatgcattcact 7355488  T
Q  556 caatttctcgttcattatgggg 577  Q
    |||||||||||||||| |||||    
T  7355489 caatttctcgttcattgtgggg 7355510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 408 - 583
Target Start/End: Complemental strand, 10179014 - 10178839
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||||||||| |||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||    
T  10179014 agatctccagtgcaattcatcaccatgttccatcaaacatccaaaacaagtattactagttcaaaatgattaaataacactaaaaattaattaaaactat 10178915  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataag 583  Q
    ||| | |||||| | ||||||||  ||| ||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  10178914 aaaatcctaaatggacactgattaaatgatttaggtcacgcattcactcaatttatcgttcattttgggggataag 10178839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 408 - 606
Target Start/End: Complemental strand, 4224984 - 4224786
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||| ||||| |||||| |||||||| |||||| |||||||| |||||||| || |||||||||||| |||  | |||||||| ||||| |||||||    
T  4224984 agatctctagtgcaattctttaccctgtttcatcaaacatccaaaccaagcattgctcgttcaaaatgataaaactacactaaaaactaattgaaaccat 4224885  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 606  Q
    ||||| || |||||||||  |||  ||| ||||||||||||||||||||| ||||| |||||||||||  ||| || | |||||||||| |||||||||    
T  4224884 aaattccttaatagtcacaaattaaatgctttaggtcatgcattcactcagtttcttgttcattatggatgatgagtgcaacatgataatctacaaatt 4224786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 410 - 598
Target Start/End: Original strand, 19943447 - 19943635
Alignment:
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    ||||||||| | | || ||||| ||||||| ||| ||||||||||||| ||  ||||||||||||||| |||||| | |||||| |||| |||||  |||    
T  19943447 atctccagttctaatcctcaccttgttccagcaaacatccaaaacaagtatggctagttcaaaatgattaaataacaataaaaactaatcaaaactctaa 19943546  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    | | |||||||| ||||||||  ||||||||||||||||||| |||||||| ||||||||||||||| |||||| | ||||||||||||    
T  19943547 aatcctaaatagacactgattatatgttttaggtcatgcatttactcaattcctcgttcattatgggagataagtgcaacatgataacc 19943635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 12109953 - 12110164
Alignment:
Q  10 agatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataa 109  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||  |  |||||||||| ||  ||||||| |||||||||| || ||| ||| ||||||    
T  12109953 agatgaaaacatgaaaagctaaattagtagataaaatatagctagcaagagaatacaattcaataaggaagtaggtgagcttgaagcataacccaaataa 12110052  T
Q  110 tcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttgg 208  Q
    |||||||||||||| | | ||||||| | ||||||| |||||||  ||||||||| ||||||||||| || || |||| |||||| | | ||| |||||     
T  12110053 tcctaactctaaatcactaagaactaccactcatgcccatctatggagaagatgacatggagtgagagctatagtgctgctaaccgtagctggaacttgt 12110152  T
Q  209 ccactcaattca 220  Q
    ||||||||||||    
T  12110153 ccactcaattca 12110164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 50688630 - 50688483
Alignment:
Q  35 gatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaact 134  Q
    ||||||||||||| ||||||| | ||| |||||||||  ||| || ||||||||||| ||  |||||| || ||||| ||||||||||| | | |||||     
T  50688630 gatagataaaatagagttaatggtagattacaatccaagaagtaaagaggtgagcttgaagtatcaccaaagtaatcataactctaaatcactaagaacg 50688531  T
Q  135 agctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||| |||||||||||||||  |||||||||||||||||||||||||||    
T  50688530 agcactcatgctcatctatggagaagatgagatggagtgagaactcta 50688483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 10179455 - 10179277
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    ||||||| |||| |||||| ||||||||||||| || || |  |||| ||||||||   ||||||  |||||||||  || ||||| | || ||||||||    
T  10179455 aaaacataaaaagctaaatagatagataaaataaagctagttcaagattacaatccttgaaggaaataggtgagctagaagcatcatc-aagtaatccta 10179357  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||| | | | ||||||||| |||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||    
T  10179356 actctaattcactaagaactagcactcatgctcatctatggagaagatgagatggagtgagaactctagtgctcctaacc 10179277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 523
Target Start/End: Original strand, 37239382 - 37239496
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||||| | | |||| ||||  ||||||||||| |||| ||||| | |||||||||||||||||||| |||||| | ||||||||| ||||||||||    
T  37239382 agatctccattacaattcctcacattgttccatcaaacatctaaaactaacattactagttcaaaatgattaaataacattaaaaattagttaaaaccat 37239481  T
Q  508 aaatttctaaatagtc 523  Q
    |||||| |||||||||    
T  37239482 aaattt-taaatagtc 37239496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 286
Target Start/End: Complemental strand, 4225433 - 4225232
Alignment:
Q  85 tgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaat 184  Q
    ||||||| || ||||||||| |||||| |||||| || | | | |||  |||| ||||||||||||||   ||||||||||||| |||||||| |||| |    
T  4225433 tgagcttgaaacatcacctagataatcataactccaagtcactaagagttagcactcatgctcatctacggagaagatgagatgaagtgagaagtctagt 4225334  T
Q  185 gctactaaccatggttggacttggccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaac 284  Q
    | | |||||| | ||||||||||||| |||||||||  |||||| | |||  ||||| | | |||| ||  ||||||||||| |||||| ||||| ||||    
T  4225333 gttgctaaccctagttggacttggccgctcaattcacaagtgtaaagtttcggacccctagcactaccacatggttgtccttatatagtacaaggtcaac 4225234  T
Q  285 ca 286  Q
    ||    
T  4225233 ca 4225232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 7354895 - 7355070
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||  ||||||||||||||||||| |  |||||  |   |||||||||  |||||| || |||||||| || |||| | ||| |||||    
T  7354895 atgaaaacatgaaaagttaaattgatagataaaataaaactaataacattttacaatccaagaaggaaagatgtgagctttaagcatcgcgtaagtaatc 7354994  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgct 187  Q
    |||||| ||||| |   ||||||| | |||||||||||||||  |||| |||||||  ||||||||||||| ||||    
T  7354995 ctaactataaatcaccaagaactaacgctcatgctcatctatggagaaaatgagataaagtgagaactctagtgct 7355070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 30500514 - 30500428
Alignment:
Q  96 catcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||||||| || ||||||||| ||||| | | | ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||    
T  30500514 catcaccaaagtaatcctaaatctaattcactaagaactagcactcatgctcatctatgaggaagatgagatggagtgagaactcta 30500428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 530
Target Start/End: Original strand, 22271132 - 22271224
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttct-aaatagtcactgatt 530  Q
    |||||| |||||| ||||| ||||| |||||||||||||| |||||| |||||||| ||| |||||| ||||| | || |||||||||||||||    
T  22271132 catcaaacatccataacaaacattattagttcaaaatgattaaataacactaaaaa-taactaaaactataaaatcctaaaatagtcactgatt 22271224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 582
Target Start/End: Complemental strand, 39327948 - 39327823
Alignment:
Q  457 gcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcactc 556  Q
    |||||||| |||||||| ||| ||||||  ||||||| || |||||| ||||||||||||||||  || | |||  ||||| ||| ||||| | ||||||    
T  39327948 gcattacttgttcaaaaagattaaataaccctaaaaactatttaaaatcataaatttctaaataaccattcattaaatgttatagatcatgtaatcactc 39327849  T
Q  557 aatttctcgttcattatgggggataa 582  Q
    ||||| || |  || |||||||||||    
T  39327848 aatttttcatagatcatgggggataa 39327823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 51461152 - 51461098
Alignment:
Q  439 atcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaa 493  Q
    ||||| |||||| ||||||||||| |||||||||||||| || ||| ||||||||    
T  51461152 atcaaacatccacaacaagcattaatagttcaaaatgattaattaacactaaaaa 51461098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 19941017 - 19941053
Alignment:
Q  139 ctcatgctcatctataaagaagatgagatggagtgag 175  Q
    |||||||||||||||  ||||||||||||||||||||    
T  19941017 ctcatgctcatctatggagaagatgagatggagtgag 19941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 7e-57; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 332 - 604
Target Start/End: Original strand, 2478465 - 2478736
Alignment:
Q  332 cccggatgacgatctagtatgctgcatcttcctatatcttcagatatgcaacttcaattccaatttgttgcgcccgagatctccagtgccattcttcacc 431  Q
    ||||| || |||||||||||||  ||||||||| |||||||    |||||  ||||||||||| |||| |   || ||||||| |||| |||||||| ||    
T  2478465 cccggctggcgatctagtatgccacatcttcctgtatcttccacaatgcattttcaattccaagttgtagttgcctagatctcgagtgtcattcttcgcc 2478564  T
Q  432 ctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattg 531  Q
     |||| |||||  ||||||| | ||||||||||| |||||| ||||||||  | |||||||| |||||||||||||||||| |||||||||||||||||     
T  2478565 ttgtttcatcatacatccaagataagcattactatttcaaa-tgatcaaactacactaaaaactaattaaaaccataaattcctaaatagtcactgatta 2478663  T
Q  532 gatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 604  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||| ||||    
T  2478664 gatgttttaggtcatgcattcacttaatttcttgttcattatgggggataagtgcaacatgataaccttcaaa 2478736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 984383 - 984109
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||  ||||||   |||||  || || ||||||||||||||||    
T  984383 atgaaaacatgaaaaactaaattgatagataaaatatagttcataaaagattacaatccaagaaggaaatgggtgaa-ttgaagcatcacctaaataatc 984285  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctac-taaccatggttggacttggcc 210  Q
    |||||| ||||| | | |||| || |||| ||||||||||||  |||| |||||||||| ||||||||||  |||||| ||||| | | |||||||| ||    
T  984284 ctaactttaaatcactaagaattaactcttatgctcatctatgtagaatatgagatggattgagaactctggtgctacttaaccttagctggacttgccc 984185  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
     || ||||||  ||| || |||||| ||||| | | |||| ||| ||||||||||||||||||  |||| ||||||    
T  984184 gcttaattcacaagtctaaaattttggacccctagcactaccatatggttgtccttttatagtagaaggtcaacca 984109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 2476677 - 2476844
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||| |||| |||||||||| || ||  ||| |||| || |  ||||||  |||||||||| || ||||||| || |||||||     
T  2476677 aaaacatgaaaaactaaattaatagctaaaatatagctagtaacagattacagtctaagaaggaaataggtgagcttgaagcatcacccaagtaatcctg 2476776  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||||||||| | | ||||||||| ||||||||||||||| |||||||||||||  |||||||||||||    
T  2476777 actctaaatcactaagaactagcactcatgctcatctatgaagaagatgagattaagtgagaactcta 2476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 311 - 606
Target Start/End: Original strand, 26573126 - 26573409
Alignment:
Q  311 atgagttcgta-aatagtacgacccggatgacgatctagtatgctgcatcttcctatatcttcagatatgcaacttcaattccaatttgttgcgcccgag 409  Q
    ||||||||||| ||||||||||| ||  ||  ||||| ||||||| ||| || |||||||||||   ||||| || | ||||||| |||| ||  |  |     
T  26573126 atgagttcgtacaatagtacgactcgactgttgatctggtatgctacatttttctatatcttcaatgatgcatctacgattccaagttgtggcttctcat 26573225  T
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    |||| ||||| ||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||  | |||||||| ||||||||| |||||    
T  26573226 atcttcagtgtcattcttcaccctgttttatcaaacatccaaaacaagcataactagttcaaaatgatcaaactacactaaaaaataattaaaa-cataa 26573324  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 606  Q
    |   |||||||||||||||||              ||||||||||||||||||||||||||| ||| ||||||  | ||| ||||||||||||||||    
T  26573325 aaaactaaatagtcactgatt------------aaatgcattcactcaatttctcgttcattttggaggataattgcaacgtgataacctacaaatt 26573409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 410 - 583
Target Start/End: Original strand, 12866110 - 12866283
Alignment:
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    ||||||| || ||||||||||  | ||||||||| ||||||| | || ||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  12866110 atctccaatgtcattcttcactttattccatcaaacatccaacataaacattactagttcaaaatgatcaaataacactaaaaactaattaaaaccataa 12866209  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataag 583  Q
    | | ||||||| ||  ||||  |||| |||| | ||||||| |||| |||||| ||||||| |||  |||||||    
T  12866210 aatcctaaatactctatgatgagatggtttaagccatgcatacacttaatttcccgttcatcatgaaggataag 12866283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 445 - 598
Target Start/End: Complemental strand, 23103239 - 23103086
Alignment:
Q  445 catccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtc 544  Q
    |||||| |||||||||||||||||||||||||  || ||| |||||||| |||||||||| ||||| | |||||||| |||| ||| |||| |||||       
T  23103239 catccacaacaagcattactagttcaaaatgaataattaacactaaaaactaattaaaactataaaatcctaaataggcactaattagatgctttagaca 23103140  T
Q  545 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
     |||||||||||| ||||| ||| ||||||||||||||| | ||||||||||||    
T  23103139 ttgcattcactcattttcttgttaattatgggggataagtgcaacatgataacc 23103086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 433 - 604
Target Start/End: Original strand, 1781357 - 1781528
Alignment:
Q  433 tgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattgg 532  Q
    |||||||| || |||||| || ||||| ||||||||||||||||| ||| || |||||||| || |||||||||||||||  ||||| |||||||||| |    
T  1781357 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattag 1781456  T
Q  533 atgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 604  Q
    ||||| |||| ||| || ||||| |||||||  |  ||||||||||||||| | || || ||||||||||||    
T  1781457 atgttataggccattcaatcacttaatttcttatcgattatgggggataagtgcaatataataacctacaaa 1781528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 421 - 562
Target Start/End: Complemental strand, 983846 - 983705
Alignment:
Q  421 cattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaata 520  Q
    ||||||||||  ||||||||||| |||  ||||||||||| ||||||| ||||||||||||  | ||| |||| |||||||||||||||| | |||||||    
T  983846 cattcttcacattgttccatcaaacataaaaaacaagcatcactagtttaaaatgatcaaactacacttaaaactaattaaaaccataaaatcctaaata 983747  T
Q  521 gtcactgattggatgttttaggtcatgcattcactcaatttc 562  Q
    | |||||||| |||| ||||| || || ||||||||||||||    
T  983746 gacactgattagatgctttagatcgtgtattcactcaatttc 983705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 16803676 - 16803412
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| ||||||||||||||||| || || | |||  ||| ||||||||   || |||   |||||||| ||| ||||||| || |||||    
T  16803676 atgaaaacatgaaaagctaaattgatagataaa-tagagatgatacgagattacaatccttgaatgaaattggtgagctaaaagcatcacc-aagtaatc 16803579  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggcc 210  Q
    |||||| ||| ||| | | ||||| | |||||||||||||||  ||||||||||||| |||||||||||||| ||| |||||| | ||||| ||||||||    
T  16803578 ctaactataattaactaaaaactatccctcatgctcatctatggagaagatgagatgtagtgagaactctaaagctgctaaccctagttggaacttggcc 16803479  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaagg 279  Q
     ||||| |||  |    | |||||  ||||||||| ||||||||||||||||||||| ||||| |||||    
T  16803478 tctcaaatcacaa--tcaaaatttcggacccttggcactaacatgtggttgtcctttcatagtacaagg 16803412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 26572699 - 26572971
Alignment:
Q  12 atgaaaacatgaaaaactaaattgataga----taaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaat 107  Q
    ||||||||||||||| ||||||||||| |    ||||||| ||||| ||  | | | |||||||  |||| | ||||||||||| || ||||||| ||||    
T  26572699 atgaaaacatgaaaagctaaattgatatagatataaaatagagttagtaacatattgcaatccaagaagggaagaggtgagcttgaagcatcacccaaat 26572798  T
Q  108 aatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttg 207  Q
    |||| ||||||||||| | | ||||||| | |||||||||||||||  ||||||||||||  ||| ||||||||| | || |||||| | | | || |||    
T  26572799 aatcttaactctaaatcactaagaactaacactcatgctcatctatggagaagatgagat-aagtcagaactctagtactgctaaccctagctagaattg 26572897  T
Q  208 gccactcaattcaagagtgtacaatttttgaccc-ttggtactaacatgtggttgtccttttatagttcaaggc 280  Q
    ||| |||||||||  |||||| ||||   ||||| |||| ||||||||||| || |||||||||||| ||||||    
T  26572898 gcctctcaattcacaagtgtaaaattcaggacccattggcactaacatgtgattttccttttatagtacaaggc 26572971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 410 - 604
Target Start/End: Original strand, 8859476 - 8859670
Alignment:
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    ||||| ||||| |||| ||| ||||||||   || |||||| ||||| ||||||||||| |||| ||| |||||| |||||||| || ||||||| ||||    
T  8859476 atctcaagtgcaattcctcatcctgttccgcaaaacatccataacaaacattactagttgaaaacgattaaataacactaaaaactacttaaaacaataa 8859575  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 604  Q
    ||| |||| ||||| |||||| |||| | || |||||||| | |||||||||||| |  ||||||||| ||||| | || || ||||||||||||    
T  8859576 attcctaagtagtctctgattagatgctatatgtcatgcaataactcaatttctcatatattatggggaataagtgcaatataataacctacaaa 8859670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 73 - 273
Target Start/End: Original strand, 12865731 - 12865932
Alignment:
Q  73 aaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagt 172  Q
    |||||||  |||||||||| || ||||||| ||||||||||||||| |||| | ||||||||| | |||||||||||||||  |||||||||||| |  |    
T  12865731 aaaggaaataggtgagcttgaagcatcacccaaataatcctaactcgaaatcaatgagaactaccactcatgctcatctatggagaagatgagatagtat 12865830  T
Q  173 gagaactctaatgctactaaccatggttggacttggccactcaattcaagagtgtacaattt-ttgacccttggtactaacatgtggttgtccttttata 271  Q
    ||||||| || || | ||||     | | ||||||||| ||||||| |   || || ||||| | ||||||||| |||||||||||||||||||||||||    
T  12865831 gagaactttagtgttgctaatgccagctagacttggccgctcaatttacatgtataaaatttctagacccttggcactaacatgtggttgtccttttata 12865930  T
Q  272 gt 273  Q
    ||    
T  12865931 gt 12865932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 29542125 - 29542395
Alignment:
Q  10 agatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataa 109  Q
    |||||||||||||||||| ||||||||||||||||||| || || ||  | | ||||||||    ||||  |||| ||||| ||| ||||||| || | |    
T  29542125 agatgaaaacatgaaaaattaaattgatagataaaatagagctagtacgatattacaatccttggaggagagaggcgagctaaaagcatcacc-aagtta 29542223  T
Q  110 tcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttgg 208  Q
    || ||||||||| | | | |||| |||| ||||||||||| |||  ||||||||||||| ||||||||||||| ||| ||||||  | | ||| ||||||    
T  29542224 tcttaactctaattcaatcagaaatagcactcatgctcatatatggagaagatgagatgaagtgagaactctagtgcaactaactctagctggaacttgg 29542323  T
Q  209 ccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggcc 281  Q
    ||  | ||||||  | |||| |||||   ||| |||| ||||||||||||||| ||||||||| | |||||||    
T  29542324 cctttaaattcacca-tgtaaaatttcgaacctttggcactaacatgtggttgcccttttatattacaaggcc 29542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 445 - 583
Target Start/End: Complemental strand, 8858982 - 8858844
Alignment:
Q  445 catccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtc 544  Q
    |||||| ||||| ||||| |  ||||||||||| |||||| |||||||| || ||||||| |||||||  ||||||||| |||||| |||| | || |||    
T  8858982 catccataacaaacattattgattcaaaatgattaaataacactaaaaactacttaaaacaataaattcataaatagtctctgattagatgctatatgtc 8858883  T
Q  545 atgcattcactcaatttctcgttcattatgggggataag 583  Q
    ||||| | |||||||||||| |  |||| ||||||||||    
T  8858882 atgcaataactcaatttctcatagattacgggggataag 8858844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 445 - 604
Target Start/End: Complemental strand, 8876005 - 8875847
Alignment:
Q  445 catccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtc 544  Q
    |||||| ||||| |||||||||||||||| ||| |||||| ||| |||| || ||||||| ||||||| |||| |||||  ||||| |||| | || |||    
T  8876005 catccataacaaacattactagttcaaaacgattaaataacact-aaaactacttaaaacaataaattcctaagtagtctatgattagatgctataagtc 8875907  T
Q  545 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 604  Q
    ||||| | |||||||||||| |  ||||||||| ||||| | ||  | ||||||||||||    
T  8875906 atgcaataactcaatttctcatatattatggggaataagtgcaatgtaataacctacaaa 8875847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 8876519 - 8876424
Alignment:
Q  82 aggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaa 177  Q
    ||||||||||||| |||||||||| ||||  |||| |||||| | | ||||||||| ||||||||||||| | |  ||||||||||||||||||||    
T  8876519 aggtgagcttaaagcatcacctaagtaattataaccctaaattactaagaactagcactcatgctcatctgtgagaaagatgagatggagtgagaa 8876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 598
Target Start/End: Complemental strand, 16803236 - 16803075
Alignment:
Q  433 tgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattgg 532  Q
    |||| |||||| |||||| |||||||||||   ||||||||| || |||||| |||||||| |||||||||| | || || |||||| || ||  ||| |    
T  16803236 tgtttcatcaaacatccacaacaagcatta---gttcaaaattattaaataacactaaaaactaattaaaactacaagttcctaaat-gtaacccattag 16803141  T
Q  533 atgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    ||   ||||| | |||||||||||||||| ||||||||||||| ||||||| | ||| ||||||||    
T  16803140 attccttaggccttgcattcactcaatttatcgttcattatggaggataagtgcaacgtgataacc 16803075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 598
Target Start/End: Complemental strand, 7228197 - 7228050
Alignment:
Q  452 aacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaat-ttctaaatagtcactgattggatgttttaggtcatgcat 550  Q
    ||||| |||||||||||||||| ||| || ||| |||||| | || ||||||| |||||  |||||||||| |||||||| ||| | |||||  || ||     
T  7228197 aacaatcattactagttcaaaaagattaattaacactaaacactacttaaaactataaaaattctaaataggcactgattagatctcttaggcaattcaa 7228098  T
Q  551 tcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    ||||||||||||| ||||||||| || | |||| | ||| ||||||||    
T  7228097 tcactcaatttcttgttcattataggagctaagtgcaacgtgataacc 7228050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 571
Target Start/End: Original strand, 25992364 - 25992497
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttct-aaatagtcactgattggatgt 536  Q
    |||||| ||||||  ||||||||||||| ||||||||||| |||||| ||||||||  || |||||| ||||  | || ||||||||||  ||| |||||    
T  25992364 catcaaacatccatgacaagcattactaattcaaaatgattaaataacactaaaaa-caactaaaactataacatcctaaaatagtcaccaattagatgt 25992462  T
Q  537 tttaggtcatgcattcactcaatttctcgttcatt 571  Q
     |||||  ||||| ||||| |||||||||||||||    
T  25992463 cttaggcaatgcaatcactaaatttctcgttcatt 25992497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 7228550 - 7228498
Alignment:
Q  232 tttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaac 284  Q
    |||| |||||||||||||||||  | |||||||||||||||| ||||||||||    
T  7228550 ttttggacccttggtactaacacattgttgtccttttatagtacaaggccaac 7228498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 519
Target Start/End: Original strand, 19856880 - 19856959
Alignment:
Q  440 tcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaat 519  Q
    |||| |||||| ||||||||| |||||||||||||||| || ||| ||||||||  | ||||||| ||||| | ||||||    
T  19856880 tcaaacatccacaacaagcatcactagttcaaaatgattaattaacactaaaaacaacttaaaactataaaatcctaaat 19856959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 5057101 - 5057159
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatcc 70  Q
    ||||||||||  |||||||||||||||||| |||||||||||  | |||| ||||||||    
T  5057101 atgaaaacatagaaaactaaattgatagattaaatatagttaggacaagattacaatcc 5057159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 27467289 - 27467547
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| | | |||||||   |||||| |||||||||| || ||||||| |||||||||||    
T  27467289 aaaacatgaaaaactaaattgaaagataaaatagagttaatagaatattgcaatccaagcaggaagaaggtgagcttgaaacatcacccaaataatccta 27467388  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggccactc 214  Q
    ||||||||| | | ||||||  ||||||||||||| |||  ||||||||||| |||||||||||||||||| |  ||||||| | ||||||| ||| ||     
T  27467389 actctaaatcactaagaactgactctcatgctcatttatggagaagatgagacggagtgagaactctaatgttgttaaccatagctggactttgcctctt 27467488  T
Q  215 aattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagt 273  Q
    ||||||  || ||| |||||| ||||||||| ||||| | |||||||||||||||||||    
T  27467489 aattcataagcgtaaaattttggacccttggcactaagacgtggttgtccttttatagt 27467547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 408 - 578
Target Start/End: Original strand, 17558787 - 17558957
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||||  ||| |||| ||||| |||||| |||| ||| ||||||| |||||||||||| |||||||| || ||| |||||||| || ||||||||||    
T  17558787 agatctccgctgcaattcctcaccttgttccttcaaacattcaaaacatgcattactagtttaaaatgattaattaacactaaaaactacttaaaaccat 17558886  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatggggg 578  Q
    |||||  |||||||||||||||| ||||||||||| |||||||| |||||||||||| ||| |||||||||    
T  17558887 aaattcataaatagtcactgattagatgttttaggccatgcattaactcaatttctcattcgttatggggg 17558957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 420 - 606
Target Start/End: Original strand, 27467814 - 27467997
Alignment:
Q  420 ccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaat 519  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||  | |||||||   ||||||||||||||||||||||||    
T  27467814 ccattcttcaccttgttccatcaaacatccaaaacaagcattattagttcaaagtgatcaaactacactaaaagccaattaaaaccataaatttctaaat 27467913  T
Q  520 agtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 606  Q
    |   | | |    |||||| |||||||||||||||||||||||||||||||||| | | ||||| |||||||||||| ||| |||||    
T  27467914 atatagtca---catgtttaaggtcatgcattcactcaatttctcgttcattatagcgtataagtgtaacatgataagctataaatt 27467997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 603
Target Start/End: Complemental strand, 25677623 - 25677459
Alignment:
Q  439 atcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttt 538  Q
    ||||| |||||| ||||||| |||||| |||||||  |  || ||| |||||||| |||||||||| ||||| | |||||||| ||| |||| ||||| |    
T  25677623 atcaaacatccacaacaagctttactatttcaaaacaactaattaacactaaaaactaattaaaactataaaatcctaaataggcaccgattagatgtct 25677524  T
Q  539 taggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaa 603  Q
    ||||| ||| | ||||||||||||| ||||||||| || | |||| | |||||||||||| ||||    
T  25677523 taggtaatgaaatcactcaatttcttgttcattataggagttaagtgcaacatgataaccaacaa 25677459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 17558388 - 17558508
Alignment:
Q  64 acaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatg 163  Q
    ||||||||  ||| || |||||||| || || |||||||||| |||||||||||  |||| | | ||||||||| |||||||||||||||  ||||||||    
T  17558388 acaatccaacaagaaaagaggtgagtttgaagcatcacctaagtaatcctaacttaaaatcactaagaactagcactcatgctcatctatggagaagatg 17558487  T
Q  164 agatggagtgagaactctaat 184  Q
    |||  ||||||||||||||||    
T  17558488 agacagagtgagaactctaat 17558508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 598
Target Start/End: Complemental strand, 24927999 - 24927840
Alignment:
Q  439 atcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttt 538  Q
    ||||| ||| || ||||||| |||||| |||||||  |  || ||| |||||||| |||||||||| ||||| | |||||||| ||| |||| ||||| |    
T  24927999 atcaaacattcacaacaagctttactatttcaaaacaactaattaacactaaaaactaattaaaactataaaatcctaaataggcaccgattagatgtct 24927900  T
Q  539 taggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    ||||| ||| | ||||||||||||  ||||||||  || | |||| | ||||||||||||    
T  24927899 taggtaatgaaatcactcaatttcctgttcattacaggagctaagtgcaacatgataacc 24927840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 25895373 - 25895428
Alignment:
Q  139 ctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||||||||||||  |||||||||||||||||||||||| ||| ||| ||||||    
T  25895373 ctcatgctcatctatggagaagatgagatggagtgagaactataaagctgctaacc 25895428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 9789868 - 9790038
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||| |||||||||||||||||||||| |||||    | |||||| || | ||||  |||  |||||| |||||||||   ||  |||||| || |||||    
T  9789868 atgagaacatgaaaaactaaattgatatataaagatgaattaataaaatattacagcccaacaaggaaagaggtgagcaacaagtatcaccaaagtaatc 9789967  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
     ||||||||||| | |    |||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  9789968 ataactctaaatcactatctactagcactcatgctcatctatggagaatattagatggagtgagaactcta 9790038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 5369983 - 5369920
Alignment:
Q  133 ctagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccat 196  Q
    ||||| |||||||||||||||  ||||||||||||| | |||||||||||| | | ||||||||    
T  5369983 ctagcactcatgctcatctatggagaagatgagatgaaatgagaactctaaagttgctaaccat 5369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 21822545 - 21822502
Alignment:
Q  140 tcatgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    |||||||||||||| || ||||||||||||| ||||||||||||    
T  21822545 tcatgctcatctatgaaaaagatgagatggaatgagaactctaa 21822502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 33856447 - 33856506
Alignment:
Q  445 catccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaac 504  Q
    |||||| ||||||||||| |||||||||||||   | ||| |||||||||||||||||||    
T  33856447 catccacaacaagcattaatagttcaaaatgacttattaacactaaaaattaattaaaac 33856506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 33856015 - 33856056
Alignment:
Q  142 atgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  33856015 atgctcatctatggagaagatgagatggagtgagaattctaa 33856056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 408 - 602
Target Start/End: Complemental strand, 17468564 - 17468371
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||| |||  |||||||||| | ||||||| || ||||||||||||||||| ||||||||||||||| |||  | ||||||||| |||||||||  |    
T  17468564 agatctctagtatcattcttcactcagttccattaaacatccaaaacaagcattgctagttcaaaatgattaaactacactaaaaat-aattaaaactgt 17468466  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctaca 602  Q
    ||||| ||||||||||||||||| |||| |||| | || |||||||||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  17468465 aaattcctaaatagtcactgattagatgctttatgccacgcattcactcaatttcttattcattatgggggataagtgtaacatgataaactaca 17468371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 17469021 - 17468840
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||||||||||| ||| |||||||| || || ||  ||| |||||||||  ||||||  |||||||||| ||  || ||| |||||||     
T  17469021 atgaaaacatgaaaaactaaattaatatataaaatagagctagtaatagattacaatccaagaaggaaataggtgagcttgaagaataaccaaaataata 17468922  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||| ||||| | | |||| |||| | ||||  |||||||  |||||| | ||||||| |||||||||| |||||||||||    
T  17468921 ctaactttaaatcactaagaa-tagcacccatgaccatctatggagaagaagggatggagcgagaactctagtgctactaacc 17468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 603
Target Start/End: Original strand, 15608272 - 15608425
Alignment:
Q  450 aaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgca 549  Q
    ||||| |||||||||| ||||||| ||| |||||| |||||||  || |||||| |||||||| ||||||||||| | ||| |||| |  | ||||||||    
T  15608272 aaaacgagcattactacttcaaaaagattaaataacactaaaagctatttaaaatcataaattcctaaatagtcaattattagatgctacatgtcatgca 15608371  T
Q  550 ttcactcaatttctcgttcattatgggggataagagtaacatgataacctacaa 603  Q
     |||||||||||||| |  ||||| | ||||||| | || || |||||||||||    
T  15608372 atcactcaatttctcatagattatagaggataagtgcaatataataacctacaa 15608425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 23361590 - 23361421
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| |||||||||||||| |||||||| || || |||| ||||||||   |||||  | |||||||| ||| ||||||| |  |||||    
T  23361590 atgaaaacatgaaaa-ctaaattgatagatgaaatatagctagtacaagattacaatccttgaaggagagtggtgagctgaaaacatcacc-acgtaatc 23361493  T
Q  112 ctaactctaaataattgagaac-tagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    | |||||||| | | | | ||  |||| |||||||||||||||  |||| ||||||||||||||||||||||    
T  23361492 caaactctaattcactaaaaaaatagccctcatgctcatctatggagaaaatgagatggagtgagaactcta 23361421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 23360958 - 23360907
Alignment:
Q  523 cactgattggatgttttaggtcatgcattcactcaatttctcgttcattatg 574  Q
    |||| ||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  23360958 cactaattagatattttaggtcgtgcattcactcaatttctcgttcattatg 23360907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 598
Target Start/End: Complemental strand, 16510678 - 16510554
Alignment:
Q  474 tgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattat 573  Q
    |||| |||||| |||||||| |||||||||  |||||    ||||||| ||||||||  ||| ||||   ||||||||| ||||||||||| ||||||||    
T  16510678 tgattaaataacactaaaaactaattaaaattataaaaacttaaataggcactgattatatgctttaacgcatgcattcgctcaatttctcattcattat 16510579  T
Q  574 gggggataagagtaacatgataacc 598  Q
    |||  ||||| | ||| ||||||||    
T  16510578 gggaaataagtgcaacgtgataacc 16510554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 43582553 - 43582629
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataa 484  Q
    ||||||||||||| |  | ||| | |||| |||||| |||||| |||| ||||||||||||||||||||| ||||||    
T  43582553 agatctccagtgctaaacctcatcatgtttcatcaagcatccacaacacgcattactagttcaaaatgattaaataa 43582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 573
Target Start/End: Complemental strand, 27892959 - 27892825
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgtt 537  Q
    |||||| ||| || ||||||||||||||||||||||||||  ||||| ||||||||  | ||||| | ||||| | |||||||| |||| ||| ||| |     
T  27892959 catcaaacatacacaacaagcattactagttcaaaatgat-taataacactaaaaacaacttaaatctataaaatactaaatagacacttattagatatc 27892861  T
Q  538 ttaggtcatgcattcactcaatttctcgttcattat 573  Q
    |||||  ||||  ||| ||||||||| || ||||||    
T  27892860 ttaggcaatgcgatcaatcaatttcttgtccattat 27892825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 16511223 - 16511191
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaa 44  Q
    ||||||||||||||| |||||||||||||||||    
T  16511223 atgaaaacatgaaaagctaaattgatagataaa 16511191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 410 - 600
Target Start/End: Complemental strand, 862077 - 861889
Alignment:
Q  410 atctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataa 509  Q
    ||||||| || ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||||    
T  862077 atctccaatgtcattcttcaccttgttccatcaaacatctaaaacaagcattactagttcaaaatggtcaaataacac-aaaaactaatt-aaaccataa 861980  T
Q  510 atttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataaccta 600  Q
    | |  | ||||| || || || |||| |||||| |||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||    
T  861979 aatcttgaatagacattgtttagatgctttaggccatgcattcattcaatttctcgttcattatgggagataagtgcaacatgataaccta 861889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 862497 - 862324
Alignment:
Q  113 taactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggccac 212  Q
    ||||||||||| | | ||||||  | ||||||||||||||| |||||||||||||||||||| ||||||| || | |||||| | | |||||||  ||||    
T  862497 taactctaaatcactaagaactgacactcatgctcatctatgaagaagatgagatggagtgaaaactctagtgatgctaaccctagctggacttccccac 862398  T
Q  213 tcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||  |||||| |||||  |||| |||| |||||  ||||||||||||||| | || ||||| ||||||    
T  862397 tcaattcacaagtgtaaaatttcggacctttggcactaatgtgtggttgtccttttgtggtacaaggtcaacca 862324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 600
Target Start/End: Complemental strand, 27902788 - 27902657
Alignment:
Q  471 aaatgatcaaataagactaaaaattaattaaaacc-ataaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttca 569  Q
    |||||||||||||| |||||||| |||  |||||| ||||| ||| |||||| |||||||| ||   ||||||||||||||||| ||||||||| |||||    
T  27902788 aaatgatcaaataacactaaaaactaacaaaaacccataaaattcaaaatagacactgattagacactttaggtcatgcattcaatcaatttcttgttca 27902689  T
Q  570 ttat-gggggataagagtaacatgataaccta 600  Q
    |||| |||||||||  | | ||||||||||||    
T  27902688 ttatagggggataaatgcagcatgataaccta 27902657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 571
Target Start/End: Original strand, 48559328 - 48559491
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||||| || |||||||| |  |||| |||||| |||||||||||||   | ||||||||||||||| |||  |  ||||||| ||||||||||  |    
T  48559328 agatctccaatgtcattcttccctttgtttcatcaaacatccaaaacaagttgtgctagttcaaaatgattaaactactctaaaaactaattaaaactct 48559427  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcatt 571  Q
    ||| |  ||||||| |||| ||| ||||||||||||||| |||||||||| ||| | |||||||    
T  48559428 aaaatcttaaataggcactaattagatgttttaggtcatacattcactcagttttttgttcatt 48559491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 48559107 - 48559280
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||  ||||||||||||||||||| ||  | ||  | | ||||||  |  || ||| || |||||||| || ||||| | ||||||||    
T  48559107 atgaaaacatgaaaagttaaattgatagataaaatagagccactaacatattacaatttaagaatgaaagatgtgagcttgaagcatcatccaaataatc 48559206  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatg 185  Q
     |||||||||||  |||| ||||||| |||||||| ||||||  | || |||||||  | ||||||||||||||    
T  48559207 ttaactctaaatcgttgaaaactagcactcatgcttatctatggaaaatatgagattaattgagaactctaatg 48559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 4287889 - 4287925
Alignment:
Q  147 catctataaagaagatgagatggagtgagaactctaa 183  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4287889 catctatatagaagatgagatggagtgagaactctaa 4287925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 32090626 - 32090710
Alignment:
Q  98 tcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||| ||||||||||||||| | |   ||||||||| || ||||||||| ||  || ||||||||| ||||||||||||||    
T  32090626 tcacctaagtaatcctaactctaactcaaaaagaactagcacttatgctcatcgatggaggagatgagattgagtgagaactcta 32090710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 598
Target Start/End: Original strand, 4288318 - 4288384
Alignment:
Q  532 gatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    |||| ||||||  ||||||||||||| ||||| |||||||||||| |||||| | ||| ||||||||    
T  4288318 gatgctttaggcaatgcattcactcagtttcttgttcattatgggagataagtgcaacgtgataacc 4288384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 7720872 - 7720922
Alignment:
Q  129 agaactagctctcatgctcatctataaagaagatgagatggagtgagaact 179  Q
    ||||||||| |||||||| |||||| || ||||||||||||||||| ||||    
T  7720872 agaactagcactcatgctaatctatgaaaaagatgagatggagtgaaaact 7720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 4288230 - 4288278
Alignment:
Q  445 catccaaaacaagcattactagttcaaaatgatcaaataagactaaaaa 493  Q
    |||||| ||||| |||||||||||||||||||| || ||| ||||||||    
T  4288230 catccataacaaacattactagttcaaaatgattaattaacactaaaaa 4288278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 408 - 598
Target Start/End: Original strand, 30122866 - 30123055
Alignment:
Q  408 agatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccat 507  Q
    ||||||||| | ||||||||| || ||||||||||| ||||||||||||  |||||||||||||||||| || |||| |||||||| |||||||||| ||    
T  30122866 agatctccaattccattcttctccatgttccatcaaacatccaaaacaaaaattactagttcaaaatgaccacataacactaaaaactaattaaaactat 30122965  T
Q  508 aaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 598  Q
    ||| | |||||||  |||| ||| ||||||||||| ||| |||| ||| |||||||| |||||||| ||||||||| | ||| ||||||||    
T  30122966 aaaatcctaaatatgcactaattagatgttttaggccatacatttacttaatttctcattcattat-ggggataagtgcaacgtgataacc 30123055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 19452541 - 19452711
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | |||||||  |||||| ||||||||||| || ||||||  || |||||    
T  19452541 atgaaaacatgaaaatcaaaatcgatagataaaatatagttaataaaagattgcaatccaacaaggaatgaggtgagcttgaagcatcactcaagtaatc 19452640  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||||||| | | |||||| || ||||||||||||| |   ||||||| |||||||||| |||||||    
T  19452641 ctaactctaaatcactaagaactcgcactcatgctcatctctggcgaagatgggatggagtgataactcta 19452711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 19528535 - 19528365
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | |||||||  |||||| ||||||||||| || ||||||  || |||||    
T  19528535 atgaaaacatgaaaatcaaaatcgatagataaaatatagttaataaaagattgcaatccaacaaggaatgaggtgagcttgaagcatcactcaagtaatc 19528436  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||||||| | | |||||| || ||||||||||||| |   ||||||| |||||||||| |||||||    
T  19528435 ctaactctaaatcactaagaactcgcactcatgctcatctctggcgaagatgggatggagtgataactcta 19528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 604
Target Start/End: Complemental strand, 7634746 - 7634610
Alignment:
Q  468 tcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgtt 567  Q
    |||||||||| |||||| |||||||| || ||||||||||||||| ||||||| ||||| ||| || | |||||| |||||| |||||||||||||  |     
T  7634746 tcaaaatgattaaataatactaaaaactacttaaaaccataaattcctaaataatcactaattagaaggtttaggccatgcaatcactcaatttcttata 7634647  T
Q  568 cattatgggggataagagtaacatgataacctacaaa 604  Q
     ||||||||||||||| |||   | ||||||||||||    
T  7634646 gattatgggggataagtgtagtgtaataacctacaaa 7634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 30122385 - 30122520
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagc-ttaaatcatcacctaaataat 110  Q
    |||||||||||||||||||| |||| | |||||||| |||||| | |||| |||||||||  |||||||||| ||||| ||  |  ||||||  ||||||    
T  30122385 atgaaaacatgaaaaactaatttgaaatataaaataaagttaacataagattacaatccaataaggaaggagatgagctttggagtatcacccgaataat 30122484  T
Q  111 cctaactctaaataattgagaactagctctcatgct 146  Q
    |||||||||||||  || |||||||| |||||||||    
T  30122485 cctaactctaaatccttaagaactagatctcatgct 30122520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 13217878 - 13218019
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||  | | | ||||| |  |||| | |||||||| || || |||||| ||| |||||    
T  13217878 atgaaaacatgaaaaactaaattgatggataaaatagagttaataacaaattgcaatctaacaagggaagaggtgagattgaagcatcacttaagtaatc 13217977  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctat 153  Q
    |||||||||||| | |  || ||||| | |||||||||||||    
T  13217978 ctaactctaaatcactaggagctagcacacatgctcatctat 13218019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 30122524 - 30122620
Alignment:
Q  190 taaccatggttggacttggccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||| | ||||||||||| || ||||||  | |||| ||  || ||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  30122524 taaccatagctggacttggccgcttaattcacaaatgtaaaagattggacccttggtactaaaatgtggttttccttttatagtacaaggccaacca 30122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 7635110 - 7635064
Alignment:
Q  236 tgacccttggtactaacatgtggttgtccttttatagttcaaggcca 282  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  7635110 tgacccttggcactcacatgtggttgtccttttatagtacaaggcca 7635064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 22541186 - 22541133
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaa 491  Q
    |||||| |||||| |||||||||||||||||||||||||| || ||| ||||||    
T  22541186 catcaaacatccacaacaagcattactagttcaaaatgattaattaaaactaaa 22541133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 25233585 - 25233536
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||| |||||||  |||||||||||||||||| ||||||||||||    
T  25233585 gacccttggcactaacacatggttgtccttttatagtacaaggccaacca 25233536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37379023 - 37379110
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacc 102  Q
    |||||||| |||||||||||||||||| ||||| || || || |||| ||||||||   |||||| | |||||||| ||| |||||||    
T  37379023 aaaacatggaaaactaaattgatagattaaatagagctagtacaagattacaatccttgaaggaaagtggtgagctaaaagcatcacc 37379110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 486 - 604
Target Start/End: Complemental strand, 29452986 - 29452868
Alignment:
Q  486 actaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcatgcattcactcaatttctcgttcattatgggggataagag 585  Q
    |||||||| ||||||||| ||||||||| |||||||||||| |||  ||||  |||  |||||| | |||||||||||  |  ||| ||||||||||  |    
T  29452986 actaaaaactaattaaaatcataaatttttaaatagtcactaattatatgtcatagaccatgcaattactcaatttctaataaattttgggggataaatg 29452887  T
Q  586 taacatgataacctacaaa 604  Q
     || || ||||||||||||    
T  29452886 caatataataacctacaaa 29452868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 13218105 - 13218150
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaaggcca 282  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||    
T  13218105 gacccttggcactaaaatgtggttgtccttttgtagtacaaggcca 13218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 14274871 - 14274596
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||| | || |||||    |  || ||||||||||| || |||||| |||||||||    
T  14274871 atgaaaacatggaaaactaaattgatagataaaatagagttactagaatattataatcctagcaaaaatgaggtgagcttgaagcatcacttaaataatc 14274772  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctac-taaccatggttggacttggcc 210  Q
     ||||| ||||| ||| |||||||||||||||  ||||||||  |||| |||||||||||||||||||||| |||| | ||||| | | | |||||||||    
T  14274771 ttaactataaatcattaagaactagctctcatcttcatctatggagaaaatgagatggagtgagaactctagtgcttcttaaccctagcttgacttggcc 14274672  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
     || ||||||  | |||  |||||  ||||| | || ||| || ||||||||||||||||| | ||||| ||||||    
T  14274671 gcttaattcacaaatgtcaaatttcggacccctagtgctaccacgtggttgtccttttataatacaaggtcaacca 14274596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 579
Target Start/End: Complemental strand, 14274414 - 14274183
Alignment:
Q  348 gtatgctgcatcttcctatatcttcagatatgcaacttcaattccaatttgttgcgcccgagatctccagtgccattcttcaccctgttccatcaaccat 447  Q
    ||||||| ||||||| ||| |||| ||  ||||| ||||||||  || || | || ||||||||||| ||||  ||| ||||||||||| |||||| |||    
T  14274414 gtatgctacatcttcttatctctttagcaatgcatcttcaatttgaagttttagctcccgagatctctagtgttattgttcaccctgtttcatcaaacat 14274315  T
Q  448 ccaaa-acaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaatttctaaatagtcactgattggatgttttaggtcat 546  Q
     |||| |||||||||| |||||||||||||| |||  | |||||||| ||||||||| |||||| |  |||||||||| | ||| | || |||| | |||    
T  14274314 tcaaacacaagcattattagttcaaaatgattaaactacactaaaaactaattaaaatcataaaatcttaaatagtcattaattagctgctttatgccat 14274215  T
Q  547 gcattcactcaatttctcgttcattatggggga 579  Q
    ||||||| || ||||||| |||| |||| ||||    
T  14274214 gcattcaatc-atttctcattcaatatgtggga 14274183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 107715 - 107643
Alignment:
Q  438 catcaaccatccaaaacaagcattactagttcaaaatgatcaaataagactaaaaattaattaaaaccataaa 510  Q
    |||||| | |||| ||||||||||||||||||||| |||| || ||| |||||||| |||||||||| |||||    
T  107715 catcaaacttccacaacaagcattactagttcaaattgattaattaacactaaaaactaattaaaactataaa 107643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 119211 - 119144
Alignment:
Q  409 gatctccagtgccattcttcaccctgttccatcaaccatccaaaacaagcattactagttcaaaatga 476  Q
    ||||||||| |||| |||||| | |||||||| || || ||||||| || ||||||||||||||||||    
T  119211 gatctccagagccaatcttcatcatgttccataaaacaaccaaaacgagaattactagttcaaaatga 119144  T

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Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 119686 - 119573
Alignment:
Q  68 tccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagat 167  Q
    |||||||| ||| ||| |||||||||  ||||||  || |||||  |||||||| | | | |||||||||  | |||||||| ||| | |||||||||||    
T  119686 tccacaaaagaaagagttgagcttaag-catcacaaaattaatctgaactctaattcactaagaactagcattaatgctcatttatgaggaagatgagat 119588  T
Q  168 ggagtgagaactcta 182  Q
    |||||||||||||||    
T  119587 ggagtgagaactcta 119573  T

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