View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_4 (Length: 613)
Name: NF18330_low_4
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 183 - 613
Target Start/End: Original strand, 30737111 - 30737524
Alignment:
| Q |
183 |
tttgatcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctagactctatggaagcatctctatgctaggattcaacaaggcatctc |
282 |
Q |
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| T |
30737111 |
tttgttcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctaaactctatggaagcatctctatgctaggattcaacaaggaatggc |
30737210 |
T |
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| Q |
283 |
tctacatctggttgaacagaagttgcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
382 |
Q |
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| T |
30737211 |
a-tccatt--------cagaagttgcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
30737301 |
T |
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| Q |
383 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaa |
482 |
Q |
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| T |
30737302 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaa |
30737401 |
T |
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| Q |
483 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaatt |
582 |
Q |
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| T |
30737402 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttac--------atgtaaacactatggaatgaatt |
30737493 |
T |
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| Q |
583 |
catcattgaagcaaggacacaaaatctattg |
613 |
Q |
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| T |
30737494 |
catccttgaagcaaggacacgaaatctattg |
30737524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 30736884 - 30737065
Alignment:
| Q |
18 |
cgaagaaactcaata--cgaattacttacaaagagaaacccaaaatctcaggttagctagccctcatagtgaacatgtaattttcttaacaaattgcttg |
115 |
Q |
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| T |
30736884 |
cgaagaaactcaattagcgaattacttacaaagagaaacccaaaatctcaggttagctagctctcttagtgaacatgtaattttcttaacaaattgcttg |
30736983 |
T |
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| Q |
116 |
actcagtaacagtagaaaatcataaacatgtaagaaccaaatagtttct-------attcttttacattgatgttttgatca |
190 |
Q |
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| T |
30736984 |
actcagtaacagtagaaaatcataaacatgtaagaaccaaatagttcctatggacaattctcttacattgatgttttgatca |
30737065 |
T |
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