View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_5 (Length: 609)
Name: NF18330_low_5
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 24269207 - 24269804
Alignment:
| Q |
1 |
tcgtacaagaagttactcgtacagttacaaatgttggctcacctggtacatattgtgtgcaagtcaaggaacctcatgggatttctgtattggttaagcc |
100 |
Q |
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| T |
24269207 |
tcgtacaagaagttactcgtacagttacaaatgttggctcacctggtacatatcgtgtgcaagtcaacgaacctcatgggatttttgtattgattaagcc |
24269306 |
T |
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| Q |
101 |
gaaatccttaacatttaatgaagttggtgaaaagaaaacattcaagattatttttaaggtaacaaaaccaacatcatcaggttatgtgtttggtcacttg |
200 |
Q |
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| T |
24269307 |
aagatccttaacatttaatgaagttggtgaaaagaaaacattcaagattatttttaaggtaacaaaaccaacatcatcaggttatgtgtttggtcacttg |
24269406 |
T |
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| Q |
201 |
ctgtggtctgatggtagacacaaagttatgagtcctcttgtagagttgtagtcaagcataactagagaaacatcggtcctcaagacacaaagtttttaat |
300 |
Q |
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| T |
24269407 |
ctgtggtctgatggtagacacaaagttatgagtcctc--------ttgtagtcaagcataactagagaaacatcgatcctcaaaacac--agtttttaat |
24269496 |
T |
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| Q |
301 |
gtatattgtgtgtagcataatagatcgtcatatgatgcacttatattggtg---nnnnnnnnnataaacaaaagagattatattaaatcaa--------c |
389 |
Q |
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| T |
24269497 |
gtatattgtgtgtagcataatagatcgtcatatgatgcacatatattggtgttttttttttttataaacaaaagagattatattaaatcaacaaatcagc |
24269596 |
T |
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| Q |
390 |
gttacacagataggccaaatcctcaaggatctctcgatccatattgaattgcgcttaataaaagtgtattggctaattcatgagctaccctattccctga |
489 |
Q |
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| T |
24269597 |
gttacacagataggccaaatcctcaaggatctctcgatccatattgaattgcgcttaataaaagtgtattggctaattcatgagctaccctattccctga |
24269696 |
T |
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| Q |
490 |
tcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaaatgttcatctt |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24269697 |
tcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaactccctgaatgcctaagtgaaagtgaaatgttcatctt |
24269796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 578
Target Start/End: Original strand, 24269789 - 24269841
Alignment:
| Q |
525 |
ttcatcttcctaatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaa |
578 |
Q |
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| T |
24269789 |
ttcatcttccta-tgcttctcacaaaactcccaaaaggcctaagtgaaagtgaa |
24269841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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