View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18330_low_6 (Length: 556)
Name: NF18330_low_6
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Complemental strand, 51740033 - 51739501
Alignment:
| Q |
16 |
ataatactattgtaattccatatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttc |
115 |
Q |
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| T |
51740033 |
ataatactattgtaattccatatttctataatcattgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttc |
51739934 |
T |
|
| Q |
116 |
tatttcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgctgcatt |
215 |
Q |
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| T |
51739933 |
tatttcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgccgcatt |
51739834 |
T |
|
| Q |
216 |
atacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51739833 |
atacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcggacacagcgattcgaccgaca |
51739734 |
T |
|
| Q |
316 |
tcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttg |
415 |
Q |
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| T |
51739733 |
tcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttg |
51739634 |
T |
|
| Q |
416 |
aaccatcgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739633 |
aaccatcgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacg |
51739534 |
T |
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| Q |
516 |
tagattacgcaatgcgtattgaatattcatctc |
548 |
Q |
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| T |
51739533 |
tagattacgcaatgcgtattgaatattcatctc |
51739501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 10200643 - 10200578
Alignment:
| Q |
81 |
taatagttcaggggcttttaggtacttttggtttctatttcttgtatttaaccaaatggctaagta |
146 |
Q |
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| T |
10200643 |
taatagttcagtagcttttaggtatttttggtttctatttcttgagtttaaccaaacggctaagta |
10200578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 10200481 - 10200362
Alignment:
| Q |
261 |
caataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccata |
360 |
Q |
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|||||||||| |||||||| |||||| || | |||||| |||||||| |||| ||| ||||| ||||| | ||| || || | |||||| || ||||| |
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| T |
10200481 |
caataagcaagccatttctgtaatcaacgctgaagacaccgcgattcgcccgatatcggatgcagcaaatcgtaactccgccgtcaaacgaatcaccatg |
10200382 |
T |
|
| Q |
361 |
ggggaacttgtgtatgatac |
380 |
Q |
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||||| |||||||||||||| |
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| T |
10200381 |
ggggagcttgtgtatgatac |
10200362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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