View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18330_low_8 (Length: 532)
Name: NF18330_low_8
Description: NF18330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18330_low_8 |
 | |
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| [»] scaffold0324 (3 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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| [»] scaffold1354 (2 HSPs) |
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| [»] scaffold0789 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 18785653 - 18785123
Alignment:
| Q |
1 |
tatggtcactagggaagtaagaaggaagaaggttgctgatgattctgctttacagaaggcacctgagattgccaaagacattgatgttcctgctaaacaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
18785653 |
tatggtcactagggaagtaagaaggaagaaggttgctgatgatgctgctttacagaaggcacttgagatttccaaagacattgatgttcctgctaaacaa |
18785554 |
T |
|
| Q |
101 |
ttgctgaaggaatcaacaattgaagcttctcataaggtaattgagctaacaggaagtctgcaagatttggtggtagttgatgagggaggaagctacttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18785553 |
ttgctgaaggaatcaacaattgaagcttctcataaggtaattgagctaataggaagtctgcaagatttggtggtagttgatgagggaggaagctacttgt |
18785454 |
T |
|
| Q |
201 |
tcagaagttgctacctcaggagctactaaaggtaatactga------------ttctcacaatacttctaataatgtaatagaaataaaatctagttcaa |
288 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18785453 |
tcagaagttgctgcttcaggagctactaaaggtaatactgaaggtaatactgattctcacaatacttctaataatgtaatagaaatagaatctagttcaa |
18785354 |
T |
|
| Q |
289 |
cctcaacctctaacacaaactctgtctcaacatctttagacatagataatattcctttgaatagagtcaatgaaaatctacacaaaagcttagccacatc |
388 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18785353 |
cctcaacctctaacataaactctgtctcaacatcttcagacatagatgatattcctttgaatagagtctatgaaaatctacacaaaagcttagccacatc |
18785254 |
T |
|
| Q |
389 |
tccatctaccaaacaccagaaagatcctaagaatgatgatacatttgtgcctatgtatccatctctttccaaatgagaatagatgtatgtcaaagactac |
488 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18785253 |
tccatctaccaaacaccagaaagatcctgagaatgatgatacatttgtgcctatgtatccatctctttccaaatgagaatagatgtatgtcaaatactac |
18785154 |
T |
|
| Q |
489 |
ttgcaaatcatcctttgcaaccacctatgat |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
18785153 |
ttgcaaatcatcctttgcaaccacctatgat |
18785123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0324 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0324
Description:
Target: scaffold0324; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 194 - 452
Target Start/End: Complemental strand, 8402 - 8147
Alignment:
| Q |
194 |
tacttgttcagaagttgctacctcaggagctactaaaggtaatactgattctcacaatacttctaataatgtaatagaaataaaatctagttcaacctca |
293 |
Q |
| |
|
|||||||||||||| |||| | |||| ||| || | |||||| |||||||||| |||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
8402 |
tacttgttcagaagctgctgcttcagaagcaacaagaggtaaccctgattctcataatatctctaat---gtaatagaaatagaatctagttcaacctca |
8306 |
T |
|
| Q |
294 |
acctctaacacaaactctgtctcaacatctttagacatagataatattcctttgaatagagtcaatgaaaatctacacaaaagcttagccacatctccat |
393 |
Q |
| |
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||||| |||||||||||||||||||| | |||||||||||| ||||||| |||||||||||| |||||||||||| || |||||| |||| ||| |
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| T |
8305 |
acctcaaacacaaactctgtctcaaccttcttagacatagatgatattcccttgaatagagtctgtgaaaatctacaaaagtctttagccccatcatcat |
8206 |
T |
|
| Q |
394 |
ctaccaaacaccagaaagatcctaagaatgatgatacatttgtgcctatgtatccatct |
452 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||||||||||||||| ||||||||||||||| |
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| T |
8205 |
ctaccaaacaccaaaaaaagcctgagaatgatgatacatttgttcctatgtatccatct |
8147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0324; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 8576 - 8470
Alignment:
| Q |
49 |
tttacagaaggcacctgagattgccaaagacattgatgttcctgctaaacaattgctgaaggaatcaacaattgaagcttctcataaggtaattgagcta |
148 |
Q |
| |
|
|||||| || |||| ||||||| |||||||| | | ||| |||||| |||||||||||||||| |||||| |||||||| |||| |||||| |||||||| |
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| T |
8576 |
tttacaaaaagcacttgagatttccaaagacctaggtgtccctgctgaacaattgctgaaggagtcaacagttgaagctgctcagaaggtagttgagcta |
8477 |
T |
|
| Q |
149 |
acaggaa |
155 |
Q |
| |
|
||||||| |
|
|
| T |
8476 |
acaggaa |
8470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0324; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 519
Target Start/End: Complemental strand, 8119 - 8058
Alignment:
| Q |
458 |
caaatgagaatagatgtatgtcaaagactacttgcaaatcatcctttgcaaccacctatgat |
519 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||| ||||||| |||||||||||||||||| |
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|
| T |
8119 |
caaatgaggattgatgtatgtcaaagactacctgctaatcatcatttgcaaccacctatgat |
8058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 351
Target Start/End: Complemental strand, 1588 - 1427
Alignment:
| Q |
187 |
aggaagctacttgttcagaagttgctacctcaggagctactaaaggtaatactgattctcacaatacttctaataatgtaatagaaataaaatctagttc |
286 |
Q |
| |
|
|||| ||||||||||||||||||| | | |||| ||| || | ||||||||| ||||| || || | || ||||||||||||||| |||||||||| |
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| T |
1588 |
aggatgctacttgttcagaagttgatgcttcagaagcaacaagaggtaataccgattcacataacatctc---taatgtaatagaaattgaatctagttc |
1492 |
T |
|
| Q |
287 |
aacctcaacctctaacacaaactctgtctcaacatctttagacatagataatattcctttgaata |
351 |
Q |
| |
|
||||||||||||| || ||| ||| || ||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
1491 |
aacctcaacctctcactcaacctcagtgtcaacttcttcagacatagataatgttcctttgaata |
1427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 13001268 - 13001364
Alignment:
| Q |
260 |
taatgtaatagaaataaaatctagttcaacctcaacctctaacacaaactctgtctcaacatctttagacatagataatattcctttgaatagagtc |
356 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| || ||| |||||| |||| |||||||||||||| |||||||| | ||||| |||| |
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|
| T |
13001268 |
taatgtaatagaaatagaatctagttcaacctcagactctcactcaacctctgtgtcaatctctttagacatagacaatattccctcgaataaagtc |
13001364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 13000986 - 13001135
Alignment:
| Q |
3 |
tggtcactagggaagtaagaaggaagaaggttgctgatgattctgctttacagaaggcacctgagattgccaaagacattgatgttcctgctaaacaatt |
102 |
Q |
| |
|
|||||| ||| ||||| |||||||||| | ||| ||||| |||| | ||||||||| ||||||||| | || |||| |||||||||| | || || |
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|
| T |
13000986 |
tggtcattagagaagtcagaaggaagagagctgcagatgaagctgcactgcagaaggcaaatgagattgctcatgaaattggtgttcctgctgagcactt |
13001085 |
T |
|
| Q |
103 |
gctgaaggaatcaacaattgaagcttctcataaggtaattgagctaacag |
152 |
Q |
| |
|
| | || |||||||||||||||| | | |||||||| |||||||| |||| |
|
|
| T |
13001086 |
ggtaaatgaatcaacaattgaagttgcccataaggtgattgagctgacag |
13001135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 12395704 - 12395793
Alignment:
| Q |
321 |
tctttagacatagataatattcctttgaatagagtcaatgaaaatctacacaaaagcttagccacatctccatctaccaaacaccagaaa |
410 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||| ||| ||| ||||| |||||| |||| ||||| ||||||||| ||||| |
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|
| T |
12395704 |
tcttcagacatagatgatattcctttgaatagattcaatgtaaaactaaacaaatctttagccccatcaccatccaccaaacactagaaa |
12395793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1354 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold1354
Description:
Target: scaffold1354; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 1854 - 1771
Alignment:
| Q |
216 |
tcaggagctactaaaggtaatactgattctcacaatacttctaataatgtaatagaaataaaatctagttcaacctcaacctct |
299 |
Q |
| |
|
|||| |||||| | |||||| |||||||||||||||| ||| ||||| ||||||||||| | |||| |||||||||| |||| |
|
|
| T |
1854 |
tcagaagctacaagaggtaacactgattctcacaatatctctgataatataatagaaatagagtctacctcaacctcaaactct |
1771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1354; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 449
Target Start/End: Complemental strand, 1762 - 1645
Alignment:
| Q |
329 |
catagataatattcctttgaatagagtcaatgaaaatctacacaaaagcttagccacatctccatctaccaaacaccagaaagatcctaagaatgatgat |
428 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || ||||| |||||| | ||| | |||| |||||||||||||| ||||| | ||| |||||||||| |
|
|
| T |
1762 |
cataaataatattcctttgagtagagtctttgccaatcttcacaaagacctagtcccatcaccatctaccaaacataagaaaaagcctgagaatgatga- |
1664 |
T |
|
| Q |
429 |
acatttgtgcctatgtatcca |
449 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
1663 |
--atttgtgcctatgaatcca |
1645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0789 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0789
Description:
Target: scaffold0789; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 5839 - 5722
Alignment:
| Q |
233 |
taatactgattctcacaatacttctaataatgtaatagaaataaaatctagttcaacctcaacctctaacacaaactctgtctcaacatctttagacata |
332 |
Q |
| |
|
|||||||||||||| || ||| |||||| ||||||||||| ||||||||||||||||| |||| || ||| ||| |||||||| || | ||| ||| |
|
|
| T |
5839 |
taatactgattctcttaacactgctaata---taatagaaatagaatctagttcaacctcagcctcacactcaacctcagtctcaacctcctcagatata |
5743 |
T |
|
| Q |
333 |
gataatattcctttgaataga |
353 |
Q |
| |
|
||| || | ||||||| |||| |
|
|
| T |
5742 |
gatgatgtccctttgagtaga |
5722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 519
Target Start/End: Complemental strand, 22804327 - 22804267
Alignment:
| Q |
458 |
caaatgagaatagatgtatgtcaaagactacttgcaaatcatcctttgcaaccacctatgat |
519 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| | ||||||||||| |||||||||||||| |
|
|
| T |
22804327 |
caaatgagaatagatgtttgtaaaaacctactt-ctaatcatcctttccaaccacctatgat |
22804267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 21693721 - 21693681
Alignment:
| Q |
480 |
aaagactacttgcaaatcatcctttgcaaccacctatgata |
520 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
21693721 |
aaagactacctgcaaatcatccttttcaaccaccaatgata |
21693681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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