View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_high_11 (Length: 399)
Name: NF18331_high_11
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 7353350 - 7353721
Alignment:
| Q |
19 |
acagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcagaatttctgcagttcaatccaagcgtctattacgactttggat |
118 |
Q |
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| T |
7353350 |
acagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgaagaatttctgcagttcaatccaagcgtctattgcggctttggat |
7353449 |
T |
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| Q |
119 |
gtgatagccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttggataccgtgaacacaaaccttc |
218 |
Q |
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| T |
7353450 |
gtgatagccaaatctaaaggcactgggtccttgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttggataccgtaaacacaaaccttc |
7353549 |
T |
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| Q |
219 |
atgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttccaatttgaacaatgcaactactactgtcatgcctgaaaagtc |
318 |
Q |
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| T |
7353550 |
atgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttccaatttgaacaatgcaactactgctgtcatgcctgaaaagtc |
7353649 |
T |
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| Q |
319 |
aagccaacaacacacgcttgcggtattatccaagctccatttgttaatgagacttattgtgtgtagtataat |
390 |
Q |
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| T |
7353650 |
aagccaacaacacatgcttgcggtattatccaagctccatttgttaatgagacttattgtgtgtagtataat |
7353721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 15493310 - 15493551
Alignment:
| Q |
25 |
ttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcagaatttctgcagttcaatccaagcgtctattacgactttggatgtgata |
124 |
Q |
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| T |
15493310 |
ttcacctttgtttgacatttagagtagcaacaatgaaatggttggtttgaagaccttcggcaatttaatctcatcatctattgtcactttggaagggttt |
15493409 |
T |
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| Q |
125 |
gccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttggataccgtgaacacaaaccttcatgagg |
224 |
Q |
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| T |
15493410 |
gccaaatctaaaggcattgggtcgtcgtcaaacattgaaaagtaaacaaatttggagaatgttgaacatttggataccgagaatgcaaacatttctgagg |
15493509 |
T |
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| Q |
225 |
tattgggtgaaaatgaaactttgaatgatgctgctattggtg |
266 |
Q |
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| T |
15493510 |
tgttatgtgaaaatgaaactttgaatggtgctactattggtg |
15493551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 31250335 - 31250380
Alignment:
| Q |
345 |
tatccaagctccatttgttaatgagacttattgtgtgtagtataat |
390 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31250335 |
tatccaatttccatttgttaatgagacttattgtgtgtagtataat |
31250380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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