View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_high_18 (Length: 326)

Name: NF18331_high_18
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_high_18
NF18331_high_18
[»] chr6 (16 HSPs)
chr6 (24-309)||(13863838-13864123)
chr6 (24-261)||(13876403-13876640)
chr6 (24-138)||(13894636-13894750)
chr6 (145-261)||(13894485-13894601)
chr6 (24-144)||(14083060-14083179)
chr6 (35-144)||(14106015-14106123)
chr6 (24-144)||(14020975-14021097)
chr6 (35-109)||(14023805-14023879)
chr6 (30-125)||(14108772-14108867)
chr6 (43-138)||(13930758-13930852)
chr6 (24-89)||(13474488-13474555)
chr6 (176-260)||(14023951-14024035)
chr6 (140-244)||(13930882-13930986)
chr6 (260-292)||(13876357-13876389)
chr6 (260-292)||(14083296-14083328)
chr6 (30-64)||(13910157-13910191)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 13864123 - 13863838
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaa 123  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| |||||| |  || | ||||||||||||||| |||||||||||    
T  13864123 catgtattttctacttgtagaatacttcaccaatgtttatggcataaataaattacacagaatagaaaagaacttgcaagttgcaaactcaattcaacaa 13864024  T
Q  124 gatactagtacataacagatacaccccatcaatctatttctgataagatagtttctcctcgcccctcagcatctatcaaaacacacaatttgtccaaatt 223  Q
    || |||| ||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||  | |||||  ||||| |||| |||||||||||||    
T  13864023 gagactactacataagagatacaccccatcaatctatatctgataggatactttctcctcgcccccaaacatctcccaaaatacaccatttgtccaaatt 13863924  T
Q  224 acaaaatccggacgtgtaaaatggggtgtattttgcaatcaagacaaatcaagtgttttgagacatgttaagtgagaggagaaatc 309  Q
    |||||||| |||||||||||| ||| | | |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  13863923 acaaaatcaggacgtgtaaaacgggatatcttttacaatcaagacaaatcaagtgttttgagacatgtcgagtgagaggagaaatc 13863838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 13876640 - 13876403
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaa 123  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||  || ||||||||||||||||| |||||||||||    
T  13876640 catgtattttctacttgtagaatacttcaccaatgtttatggcataaataaattacacagaatacaaaagaaattgcaagttgcaaactcaattcaacaa 13876541  T
Q  124 gatactagtacataacagatacaccccatcaatctatttctgataagatagtttctcctcgcccctcagcatctatcaaaacacacaatttgtccaaatt 223  Q
    || |||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  13876540 gagactactacataagagaaacaccccatcaatctatttctgataggatagtttctcctcgccccttaacatctattaaaacacacaatttgtccaaatt 13876441  T
Q  224 acaaaatccggacgtgtaaaatggggtgtattttgcaa 261  Q
    ||||||| |||||||||||||| |||||| ||||||||    
T  13876440 acaaaatacggacgtgtaaaatagggtgtcttttgcaa 13876403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 13894750 - 13894636
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||    
T  13894750 catgtattttgtacttgtagaatacttcaccaatgtttattgcataaataaattacagagaatacaaaaggaattgcaagttgcaaactccattcaacaa 13894651  T
Q  124 gatactagtacataa 138  Q
    || ||||||||||||    
T  13894650 gagactagtacataa 13894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 13894601 - 13894485
Alignment:
Q  145 caccccatcaatctatttctgataagatagtttctcctcgcccctcagcatctatcaaaacacacaatttgtccaaattacaaaatccggacgtgtaaaa 244  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||  |||||||||||||||||    
T  13894601 caccccatcaatctatttattataggatagtttctcctcgcccctcaacatctctcaaaacacacaatttgtccgaattactcaatccggacgtgtaaaa 13894502  T
Q  245 tggggtgtattttgcaa 261  Q
    |||  ||| ||||||||    
T  13894501 tggattgtcttttgcaa 13894485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 14083060 - 14083179
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaa 123  Q
    |||||| ||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||  ||| | |||| ||||| ||| |||||||||||    
T  14083060 catgtaatttttacttgtagaatacttcatcattgtttattgcataaataaattacagagaatacaaaaggtactgcatgttgc-aactcaattcaacaa 14083158  T
Q  124 gatactagtacataacagata 144  Q
    || |||| ||||||| |||||    
T  14083159 gagactattacataaaagata 14083179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 14106015 - 14106123
Alignment:
Q  35 tacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaagatactagtac 134  Q
    |||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||  ||| |||||||||||| ||| ||||||||| | | ||||||||    
T  14106015 tacttgtaaaatactccaccaatgtttattgcatgaataaattacagagaatacaaaaggcattgcaagttgc-aactcaattcaacgacagactagtac 14106113  T
Q  135 ataacagata 144  Q
    |||| |||||    
T  14106114 ataagagata 14106123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 14020975 - 14021097
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccataaataaattacagagaat----acagcaggaattgcaagttgcaaacacaattca 119  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||    |||  ||| |||||||||||||| | |||||||    
T  14020975 catgtatttt-tacttgtagaatacttcaacaatgtttattgcatgaataaattacagagaattaatacaaaaggtattgcaagttgcaa-ctcaattca 14021072  T
Q  120 acaagatactagtacataacagata 144  Q
    |||||| |||| ||||||| |||||    
T  14021073 acaagagactattacataagagata 14021097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 14023805 - 14023879
Alignment:
Q  35 tacttgtagaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaa 109  Q
    |||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||  ||| ||||||||||||||    
T  14023805 tacttgtataatacttcatcaatgtttattgcatgaataaattacagagaatacaaaaggcattgcaagttgcaa 14023879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 14108772 - 14108867
Alignment:
Q  30 ttttgtacttgtagaatacttcaccaatgtttattccataaataaattacagag-aatacagcaggaattgcaagttgcaaacacaattcaacaaga 125  Q
    |||| |||||||||||||||||||| | ||||||| ||| |||||||||||||| ||||||  ||| |||||||||||| ||| |||||||||||||    
T  14108772 ttttttacttgtagaatacttcaccgaagtttattgcatgaataaattacagagaaatacaaaaggtattgcaagttgc-aactcaattcaacaaga 14108867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 13930758 - 13930852
Alignment:
Q  43 gaatacttcaccaatgtttattccataaataaattacagagaatacagcaggaattgcaagttgcaaacacaattcaacaagatactagtacataa 138  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||  ||| | |||||||| | ||| ||||||||||||| |||| |||||||    
T  13930758 gaatacttcacaaatgtttattgcataaataaatgacagagaatacaaaaggtagtgcaagttac-aactcaattcaacaagagactaatacataa 13930852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 13474555 - 13474488
Alignment:
Q  24 catgtattttgtacttgtagaatacttcaccaatgtttattccata--aataaattacagagaataca 89  Q
    |||||||||| ||||||||||||||  |||||||||||||| ||||  ||||||||||||||||||||    
T  13474555 catgtattttttacttgtagaatacaccaccaatgtttattgcatatgaataaattacagagaataca 13474488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 14023951 - 14024035
Alignment:
Q  176 ttctcctcgcccctcagcatctatcaaaacacacaatttgtccaaattacaaaatccggacgtgtaaaatggggtgtattttgca 260  Q
    ||||||||| |||||| ||||| ||||||||| |||||||||  ||||||| ||||| |||||||||||  |||||| |||||||    
T  14023951 ttctcctcggccctcaacatctctcaaaacactcaatttgtctgaattacacaatcccgacgtgtaaaacagggtgtcttttgca 14024035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 13930882 - 13930986
Alignment:
Q  140 agatacaccccatcaatctatttctgataagatagtttctcctcgcccctcagcatctatcaaaacacacaatttgtccaaattacaaaatccggacgtg 239  Q
    |||||||||||| |||||||||||  |   ||| |||||||||| ||||||| | ||| |||||||||  |||||||||  |||||| |||||||| |||    
T  13930882 agatacaccccaacaatctatttcctagtggattgtttctcctctcccctcaacgtctctcaaaacactaaatttgtccggattacacaatccggatgtg 13930981  T
Q  240 taaaa 244  Q
    |||||    
T  13930982 taaaa 13930986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 13876389 - 13876357
Alignment:
Q  260 aatcaagacaaatcaagtgttttgagacatgtt 292  Q
    |||||||||||||||||||||||||||||||||    
T  13876389 aatcaagacaaatcaagtgttttgagacatgtt 13876357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 14083296 - 14083328
Alignment:
Q  260 aatcaagacaaatcaagtgttttgagacatgtt 292  Q
    |||||||||||||||||||||||||||||||||    
T  14083296 aatcaagacaaatcaagtgttttgagacatgtt 14083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 13910157 - 13910191
Alignment:
Q  30 ttttgtacttgtagaatacttcaccaatgtttatt 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  13910157 ttttttacttgtagaatacttcaccaatgtttatt 13910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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