View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_high_2 (Length: 675)

Name: NF18331_high_2
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_high_2
NF18331_high_2
[»] chr1 (1 HSPs)
chr1 (16-657)||(8437261-8437894)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Complemental strand, 8437894 - 8437261
Alignment:
Q  16 atgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437894 atgaatgatactgttatttttgcaaggatgaatggtgatgagaatgatagttgtatgcagtttttgagggacatggaagttgttcaggttcctacttttt 8437795  T
Q  116 tgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttactta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437794 tgttcattagagatggtaagattgctggtaggtatgttggttcagggaaaggtgaactcattggtgaaattctcaggtaccaaggagttcgtgttactta 8437695  T
Q  216 tt------aaatcaaatcaattgcttgttcatgtttgtattgatcataaacnnnnnnnnnnnnnnnnnnnngttaaggatttgtctcactgatttcattt 309  Q
    ||      |||||||||||||||||||||||||| ||||||||||||||||                    |||||||||||||||||||||||||||||    
T  8437694 ttaaaatcaaatcaaatcaattgcttgttcatgtgtgtattgatcataaacatatttttgtgagatatatagttaaggatttgtctcactgatttcattt 8437595  T
Q  310 ttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctcc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437594 ttcgaaagatatatccttatcttttttgtttactggcaatatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctcc 8437495  T
Q  410 acacacttcactaagttataactaatgtaaaaagttannnnnnnngcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaac 509  Q
    |||||||||           |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437494 acacacttc-----------actaatgtaaaaagtta--ttttttgcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaac 8437408  T
Q  510 tagaattgtatcaatgcaaataattaagaggaaattaaaataagctagtgaataatccaagagctgaccatgaaaaaccatatttgtttaata----tta 605  Q
    ||||||||||||||||||||    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    |||    
T  8437407 tagaattgtatcaatgcaaa----taagaggaaattaaaagaagctagtgactaatccaagagctgaccatgaaaaaccatatttgtttaatattactta 8437312  T
Q  606 cttgtcgtcataatcttatggtatggcatttgacaaacctctctggtgaacc 657  Q
    ||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  8437311 cttttcgt-ataatcttatggtatggcatttgacaaacctccctggtgaacc 8437261  T

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