View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_high_22 (Length: 294)
Name: NF18331_high_22
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 11078958 - 11079234
Alignment:
| Q |
1 |
aacgtttccatatctcaatatatatcatctatctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttccac |
100 |
Q |
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| T |
11078958 |
aacgtttccacgtctcaatatatatcatctgtctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttccac |
11079057 |
T |
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| Q |
101 |
ctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgtt |
200 |
Q |
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| T |
11079058 |
ctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgtt |
11079157 |
T |
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| Q |
201 |
ggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggag |
277 |
Q |
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| T |
11079158 |
ggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggag |
11079234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 11018323 - 11018412
Alignment:
| Q |
129 |
tcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatag |
218 |
Q |
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| T |
11018323 |
tcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
11018412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 11001952 - 11002094
Alignment:
| Q |
133 |
agcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagtta |
232 |
Q |
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| T |
11001952 |
agcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtattatcttagatttcctcacctatagtgcctcacaagtca |
11002051 |
T |
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| Q |
233 |
ccaacaatcttgaaattccaacttacttttactacacctcagg |
275 |
Q |
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| T |
11002052 |
ccaccaaccttgaaattcctacttacttttactatacttcagg |
11002094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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