View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_high_32 (Length: 250)

Name: NF18331_high_32
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_high_32
NF18331_high_32
[»] chr3 (8 HSPs)
chr3 (14-250)||(37418175-37418411)
chr3 (32-237)||(53341007-53341218)
chr3 (49-228)||(53058933-53059115)
chr3 (56-248)||(53067876-53068068)
chr3 (49-239)||(53062114-53062313)
chr3 (125-219)||(53972116-53972210)
chr3 (146-204)||(39558463-39558521)
chr3 (177-237)||(27816232-27816292)
[»] chr7 (7 HSPs)
chr7 (56-239)||(31013642-31013828)
chr7 (146-228)||(11377394-11377476)
chr7 (113-222)||(47606599-47606708)
chr7 (176-228)||(11374242-11374294)
chr7 (143-234)||(12539873-12539964)
chr7 (152-222)||(19974775-19974845)
chr7 (178-222)||(19926530-19926574)
[»] chr2 (1 HSPs)
chr2 (86-239)||(6687145-6687301)
[»] chr8 (2 HSPs)
chr8 (143-228)||(35396100-35396185)
chr8 (129-204)||(5387801-5387876)
[»] chr4 (1 HSPs)
chr4 (143-216)||(56164454-56164527)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 37418175 - 37418411
Alignment:
Q  14 aggcaatcatatcatcagatcctggttttacaatcaactgcgatgtccaagtcgaagaagcaacgatcatggattccaacagaaaagtgcgacagggtta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37418175 aggcaatcatatcatcagatcctggttttacaatcaactgcgatgtccaagtcgaagaagcaacgatcatggattccaacagaaaagtgcgacagggtta 37418274  T
Q  114 gctcccttccagactcaattatctgtcgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtg 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37418275 gctcccttccagactcaattatctgtcatattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtg 37418374  T
Q  214 gctctcagtcttcaccctcgatttcagcgagcacacc 250  Q
    |||||||||||||||||||||||||| ||||||||||    
T  37418375 gctctcagtcttcaccctcgatttcaccgagcacacc 37418411  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 53341218 - 53341007
Alignment:
Q  32 atcctggttttacaatcaactgcgatgtccaagtcgaagaagcaacgatcatggattccaacagaaaagtg------cgacagggttagctcccttccag 125  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||| |||| |||| ||||      |||||||||||||||||||||||    
T  53341218 atcctggttttgcaatcaactgcgatgtcaaagtccaagaagcagcgatcatcgataccaatagaagagtgtgagtacgacagggttagctcccttccag 53341119  T
Q  126 actcaattatctgtcgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtctt 225  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||  |||||||| |    
T  53341118 actcaattatctgtcacattctctcctttctcccaaccaaagacaccgtcgccacaagcatcctctcaaagaggtggaaaccattatgtatctcagtcct 53341019  T
Q  226 caccctcgattt 237  Q
    ||| ||||||||    
T  53341018 cactctcgattt 53341007  T

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Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 53058933 - 53059115
Alignment:
Q  49 aactgcgatgtccaagtcgaagaagcaacgatcatg---gattccaacagaaaagtgcgacagggttagctcccttccagactcaattatctgtcgtatt 145  Q
    |||||| |||||||||||||||||||| |||||||    ||||||||  ||| |||| |||||||||||||||||||| ||||||||||||||||  |||    
T  53058933 aactgccatgtccaagtcgaagaagcagcgatcatcatcgattccaattgaagagtgtgacagggttagctcccttccggactcaattatctgtcacatt 53059032  T
Q  146 ctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcac 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  53059033 ctctcctttctcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattgtggctctcagtcctcac 53059115  T

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Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 53067876 - 53068068
Alignment:
Q  56 atgtccaagtcgaagaagcaacgatcatggattccaacagaaaagtgcgacagggttagctcccttccagactcaattatctgtcgtattctctcctttc 155  Q
    |||||||||||||||||||  ||||||| |||||||| |||| || || ||| ||||||||||||||| ||||| ||||||| ||  |||||||||||||    
T  53067876 atgtccaagtcgaagaagcggcgatcatcgattccaatagaagagcgcaacaaggttagctcccttccggactcgattatctatcacattctctcctttc 53067975  T
Q  156 tcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgatttcagcgagcaca 248  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||| ||| ||||    
T  53067976 tcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattatggctctcagtcttcactctcaatttcaccgatcaca 53068068  T

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Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 53062114 - 53062313
Alignment:
Q  49 aactgcgatgtccaagtcgaagaagcaacgatcatg---gattccaacagaaaagtgcgacagggttag-ctcccttccagactcaatt-----atctgt 139  Q
    |||||| |||||||||||||||||||| |||||||    ||||||||  ||| |||| ||||||||||| ||||||||||||||||| |     ||||||    
T  53062114 aactgccatgtccaagtcgaagaagcagcgatcatcatcgattccaattgaagagtgtgacagggttagtctcccttccagactcaactcaactatctgt 53062213  T
Q  140 cgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgatttca 239  Q
    |  ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||  |||||||| ||||||||||    
T  53062214 cacattctctcctttctcccaaccaaagacaccgtcgccacaagcatcctctccaagaggtggaaaccattatggctctatgtcttcactctcgatttca 53062313  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 53972210 - 53972116
Alignment:
Q  125 gactcaattatctgtcgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctc 219  Q
    ||||||||||||| |   || ||||| ||||| |||||||||||| | | | |||||| ||||||||||||||||||||| ||||| ||| ||||    
T  53972210 gactcaattatctcttacatactctcttttcttccaaccaaagactccgcccccacaaccatcctctcaaagaggtggaagccattatggatctc 53972116  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 39558463 - 39558521
Alignment:
Q  146 ctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaa 204  Q
    ||||| ||||| || ||||||||| |||  ||||||| |||||||||||||||||||||    
T  39558463 ctctcttttcttcctaccaaagacgctgcggccacaaccatcctctcaaagaggtggaa 39558521  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 27816292 - 27816232
Alignment:
Q  177 ccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgattt 237  Q
    |||||||||||||||||||||| ||||   |  ||||||||||||| | ||||||||||||    
T  27816292 ccacaagcatcctctcaaagagatggagatcggtgtggctctcagtttgcaccctcgattt 27816232  T

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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 31013642 - 31013828
Alignment:
Q  56 atgtccaagtcgaagaag---caacgatcatggattccaacagaaaagtgcgacagggttagctcccttccagactcaattatctgtcgtattctctcct 152  Q
    ||||||||||||||||||   || ||||||| |||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||  ||||||||||    
T  31013642 atgtccaagtcgaagaagaatcagcgatcatcgattccaatagaagagtgcgacagggatagctcccttccggactcaattatctgtcacattctctcct 31013741  T
Q  153 ttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgatttca 239  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  31013742 ttctaccaaccaaagacaccgtcgccacaagcatcctttcaaagaggtggaaaccattatggctctcagtcttcactctcgatttca 31013828  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 11377394 - 11377476
Alignment:
Q  146 ctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcac 228  Q
    ||||| ||||| || ||||||||  ||| |||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  11377394 ctctcttttcttcctaccaaagaatctgccgccactagcatcctctccaagagatggaacccattgtggctctccgtcctcac 11377476  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 47606708 - 47606599
Alignment:
Q  113 agctcccttccagactcaattatctgtcgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgt 212  Q
    |||||| ||||||||   ||||| ||||  ||||| || |||||||||||||||  ||  |  || |||||||||||||||||||| ||||||||| | |    
T  47606708 agctcctttccagaccatattatatgtcacattctatcttttctcccaaccaaactcagcgcagctacaagcatcctctcaaagagatggaacccactat 47606609  T
Q  213 ggctctcagt 222  Q
    ||||||||||    
T  47606608 ggctctcagt 47606599  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 11374242 - 11374294
Alignment:
Q  176 gccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcac 228  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  11374242 gccactagcatcctctccaagagatggaacccattgtggctctccgtcctcac 11374294  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 12539873 - 12539964
Alignment:
Q  143 attctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcga 234  Q
    |||||||| |||||||| |||||| |  |||  ||||||||||| ||||| || || ||||| |||||||||| |||||| ||||| |||||    
T  12539873 attctctcttttctccctaccaaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcga 12539964  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 19974845 - 19974775
Alignment:
Q  152 tttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagt 222  Q
    ||||| ||||||||| |  ||| ||||||||||||||| |||||||| ||||| ||| | |||||||||||    
T  19974845 tttctaccaaccaaaaaatctgccgccacaagcatcctttcaaagagatggaaaccactatggctctcagt 19974775  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 19926530 - 19926574
Alignment:
Q  178 cacaagcatcctctcaaagaggtggaacccattgtggctctcagt 222  Q
    ||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  19926530 cacaagcattctctcaaagagatggaacccattatggctatcagt 19926574  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 6687145 - 6687301
Alignment:
Q  86 attccaacagaaaagtgcgacagggttagctcccttccagactcaattatctgtcgtattctctcctttctcccaaccaaagac---actgtcgccacaa 182  Q
    ||||||| |||| ||| |||||||||||||||||||||| |||||||||| |||| ||||||||| ||||| ||||||||||||   |||||||||||||    
T  6687145 attccaaaagaatagtacgacagggttagctcccttccatactcaattatttgtcatattctctcatttcttccaaccaaagacagtactgtcgccacaa 6687244  T
Q  183 gcatcctctcaaagaggtggaacccattgtggctctcagtcttcaccctcgatttca 239  Q
    |||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||    
T  6687245 gcatcctctcgaagagatggaaaccattatggctctcagtcttaactctcgatttca 6687301  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 35396100 - 35396185
Alignment:
Q  143 attctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggctctcagtcttcac 228  Q
    |||||||| |||||||| |||||| |  ||| | |||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  35396100 attctctcgtttctccctaccaaacaatctgccaccactagcatcctctctaagagatggaacccattgtggctctccgtcctcac 35396185  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 5387876 - 5387801
Alignment:
Q  129 caattatctgtcgtattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaa 204  Q
    ||||||| ||||  |||||||| ||||| || |||||| |||| | | |||||||||||||||||| |||||||||    
T  5387876 caattatttgtctcattctctcttttcttcctaccaaacacacggccaccacaagcatcctctcaacgaggtggaa 5387801  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 56164454 - 56164527
Alignment:
Q  143 attctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaacccattgtggct 216  Q
    |||||||| |||||||||||||||||| | |||||||||||| ||||||| |||  |||||| ||||| |||||    
T  56164454 attctctcttttctcccaaccaaagactcggtcgccacaagcgtcctctcgaagcagtggaatccattatggct 56164527  T

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