View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_high_39 (Length: 238)
Name: NF18331_high_39
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37418542 - 37418762
Alignment:
| Q |
1 |
ttgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttacacatgaaattagcttccaaaatattcacctgtaggacgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37418542 |
ttgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttagacatgaaattagcttccaaaatattcacctgtaggacgct |
37418641 |
T |
|
| Q |
101 |
tactgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttagattgtgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37418642 |
tactgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttagattgtgtt |
37418741 |
T |
|
| Q |
201 |
cctttcatgactcgtacgctt |
221 |
Q |
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| ||||||||||||||||||| |
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| T |
37418742 |
catttcatgactcgtacgctt |
37418762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 53059276 - 53059479
Alignment:
| Q |
1 |
ttgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttacacatgaaattagcttccaaaatattcacctgtaggacgct |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| | |||| | | || |||| ||||||||||||||||||| |||||||| |||| |||||| |
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| T |
53059276 |
ttgcagcaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagcttccaacatattcacttgtatgacgct |
53059375 |
T |
|
| Q |
101 |
tactgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttagattgtgtt |
200 |
Q |
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| T |
53059376 |
tactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaata---aataatactatttcactactcaaaactctccacttggatagcgtt |
53059472 |
T |
|
| Q |
201 |
cctttca |
207 |
Q |
| |
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|||||| |
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| T |
53059473 |
actttca |
53059479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 53068502 - 53068698
Alignment:
| Q |
1 |
ttgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttacacatgaaattagcttccaaaatattcacctgtaggacgct |
100 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||| | |||| ||| || |||| || |||||||||||||||| |||||||| |||||||| || |
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| T |
53068502 |
ttgcagcgatacaaagacgaactgaaacccttgaacttaacatgttgtttcatactttcgacttgaaattagcttccaacatattcacttgtaggacact |
53068601 |
T |
|
| Q |
101 |
tactgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttagattgtgtt |
200 |
Q |
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| T |
53068602 |
tgctgttctcaaattaaaacgcctaacaatcgtcaaagacattcctcaaata---aatagtactatttcactactcaaaactctccacttggatggtgtt |
53068698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 53340854 - 53340737
Alignment:
| Q |
1 |
ttgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttacacatgaaattagcttccaaaatattcacctgtaggacgct |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| | |||| ||| || |||| ||||||||||||||||||| |||||||| ||||||| | | |
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| T |
53340854 |
ttgcagccatacaaagacgaactgaaacccttgaacttaacatgttgtttcatactttcgacatgaaattagcttccaacatattcacttgtaggaagtt |
53340755 |
T |
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| Q |
101 |
tactgttctcaaattaaa |
118 |
Q |
| |
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||||||||| |||||||| |
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| T |
53340754 |
tactgttcttaaattaaa |
53340737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 6687460 - 6687672
Alignment:
| Q |
6 |
gcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttaca----catgaaattagcttccaaaatattcacctgtaggacgctt |
101 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| ||||| || |||| | || || || |||||||| |||||||| |||||||||||| |
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| T |
6687460 |
gcaatacaaagacaaactgaaaccctagaacttagtatgaattttcataatttagatagacaataacttggcttccaagatattcacttgtaggacgctt |
6687559 |
T |
|
| Q |
102 |
actgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttagattgtgttc |
201 |
Q |
| |
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|||||||||||||||| |||| |||| || | |||||||| ||| |||||| |||||| || ||||||||||||||||||||| ||||| |
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| T |
6687560 |
actgttctcaaattaactgacctagtaatccgacacgacattcctcaaata---aataatcctatttgacacctcaaaactctccacttagatactgttc |
6687656 |
T |
|
| Q |
202 |
ctttcatgactcgtac |
217 |
Q |
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||||||||||||||| |
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| T |
6687657 |
gtttcatgactcgtac |
6687672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 31013984 - 31014069
Alignment:
| Q |
3 |
gcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttacacatgaaattagcttccaaaatattcac |
88 |
Q |
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||||||||||||||| |||||||||||||||||| | |||| ||| || ||||| |||||||||||| ||||||||||||||| |
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| T |
31013984 |
gcagcaatacaaagatgaactgaaacccttgaacttaacatgttgtttgattctttagacatgaaattagtttccaaaatattcac |
31014069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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