View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_high_8 (Length: 427)
Name: NF18331_high_8
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 29828963 - 29828567
Alignment:
| Q |
18 |
aagaaatcaaaacctgattcagtagcatgcgtctagacatggatgttaaagatttgcagtgcgatgcggacaaacgttttaattttggaggaaccccttg |
117 |
Q |
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| T |
29828963 |
aagaaatcaaaacctgattcagtagcatgcgtctagacatggatgtcaaagatttgcagtgcaatgcggacaaacgttttaattttggaggaaccccttg |
29828864 |
T |
|
| Q |
118 |
aatttctcgaagatacttgcaaccgttgacatcaagcaaacttaaaagacaacattcttcaagacatttcggaagaactgtgaaattgttccatgacaga |
217 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29828863 |
aatttctcgaagatacttgcaactgttgacattaagcaaacttaaaagacaacattgttcaagacatttcggaagaactgtgaaattgttccatgacaga |
29828764 |
T |
|
| Q |
218 |
tctaaatgtcccacattagcaaaccacgttagaattattggaagaaaatcatctgacgggttacatttcgggagtccaagtattcgtacatctgaaggta |
317 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
29828763 |
tctaaatgttccacattagcaaaccatgttagaattattggaagaaaatcatctgacgggttacattttgggagtccaagtattcgtacatctgaaggca |
29828664 |
T |
|
| Q |
318 |
ctatggagctcagttcagcattttgttttggaaatatacaacctgaagcatcagtcaataattttggcatcgtgagaatgctactctgtagaatttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29828663 |
ctatggagctcagttcagcattttgttttggaaatagacaacctgaagcatcagtcaataattttggcatcgtgagaatgctactttgtagaatttg |
29828567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 16694090 - 16693986
Alignment:
| Q |
26 |
aaaacctgattcagtagcatgcgtctagacatggatgttaaagatttgcagtgcgatgcggacaaacgttttaattttggaggaaccccttgaatttctc |
125 |
Q |
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|||||||||||||||||||||| ||| | ||| | ||||||| || ||| |||| |||||||||||||| |||||||||| |||| |||||||| |
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| T |
16694090 |
aaaacctgattcagtagcatgcttctgcatgaggaagacaaagattcacattgcaatgcagacaaacgttttaaatttggaggaatccctctaatttctc |
16693991 |
T |
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| Q |
126 |
gaaga |
130 |
Q |
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||||| |
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| T |
16693990 |
gaaga |
16693986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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