View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_10 (Length: 415)
Name: NF18331_low_10
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 43012579 - 43012959
Alignment:
| Q |
17 |
aatccctagttttggcttgtttctgctataaaccacgagttcctgcttcttggtgtcattcactgctttcttagattttttggctccgctgctactactc |
116 |
Q |
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| T |
43012579 |
aatccctagttttggcttgtttctgctataaaccacgagttcctgcttcttggtgtcattcactgctttcttagattttttggctccgctgctactactc |
43012678 |
T |
|
| Q |
117 |
acaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaactgagctaccttgacagcttcttccattttgttctttctcttcttcacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012679 |
acaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaactgagctaccttgacagcttcttccattttgttctttctcttcttcacat |
43012778 |
T |
|
| Q |
217 |
tagtcccttctctggccttaaaagggaaaggtttttccttttctgaagtggaggtaaaggttcaaccttttgctcctcatgacgccccaagaaccgaact |
316 |
Q |
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||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012779 |
tagtcccatctctggccttaaaatggaaaggtttttcc--ttctgaagtggaggtaaaggttcaaccttttgctcctcatgacgccccaagaaccgaact |
43012876 |
T |
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| Q |
317 |
tgttggcgttggccccactgccccataccagtgaatttgatctcagaccaacatgaaccctgcttgggaaccaaactagtagc |
399 |
Q |
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| T |
43012877 |
tgttggcgttggccccactgcaccataccagtgaatttgatctcagaccaacatgaaccctgcttgggaaccaaactagtagc |
43012959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 83 - 399
Target Start/End: Original strand, 18220918 - 18221244
Alignment:
| Q |
83 |
tttcttagattttttggctccgctgctactactcacaccttgttgatttttgttgcattgacgagttgtcctctgtacctcaaactgagctaccttgaca |
182 |
Q |
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| T |
18220918 |
tttcttagactttttggccacgctgctactacttacaccttgttgatttttgttgcattgacgagtcaccctctgtacctcaaaaggagctaccttcaca |
18221017 |
T |
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| Q |
183 |
gcttcttccattt------------tgttctttctcttcttcacattagtcccttctctggccttaaaagggaaaggtttttccttttctgaagtggagg |
270 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| || | ||||||||| ||||| ||| |
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| T |
18221018 |
acttcttccatttcttctttttcaatgttctttctcttcttcacaatagtccctactctggccttaaaaatgacacctttttcctt--ctgaatcacagg |
18221115 |
T |
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| Q |
271 |
taaaggttcaaccttttgctcctcatgacgccccaagaaccgaacttgttggcgttggccccactgccccataccagtgaatttgatctcagaccaacat |
370 |
Q |
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| T |
18221116 |
taaaggttcaaccttttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacat |
18221215 |
T |
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| Q |
371 |
gaaccctgcttgggaaccaaactagtagc |
399 |
Q |
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| T |
18221216 |
gaaccctgcttgggaaccaaactagtagc |
18221244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 18220801 - 18220920
Alignment:
| Q |
14 |
atcaatccctagttttggcttgtttctgctataaaccacgagttcctgcttcttggtgtcattcactgctttcttagattttttggctccgctgctacta |
113 |
Q |
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|||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| | || |||| |||| |
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| T |
18220801 |
atcaatccatatttttggcttgtttcttctataaaccacaagttcctgcttcttggtgtcattcactgctttctcagactttttatccccactgccacta |
18220900 |
T |
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| Q |
114 |
ctcacaccttgttgattttt |
133 |
Q |
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||||||||||| |||||||| |
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| T |
18220901 |
ctcacaccttggtgattttt |
18220920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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