View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18331_low_13 (Length: 366)
Name: NF18331_low_13
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_13 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0983 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33226118 - 33226467
Alignment:
| Q |
1 |
tttaattatgtggtggctaaaattgattttgtagaattgagtttagctaaaacgatttgagcaaaaattaatttatgtttggatactttcacaacaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
33226118 |
tttaattatgtggtggctaaaattgattttttagaattgagtttagctaaaatgatttgagcaaaaattgatttatgtttggataatttcacaacaaaag |
33226217 |
T |
|
| Q |
101 |
taatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttatttatacatttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
33226218 |
taatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttgaatggacaaattattaaaatggtttttcacatttatttatacatttgct |
33226317 |
T |
|
| Q |
201 |
taacatataacaaattggtatttaagagtctctattttatgatgcccacaatcactctacttcagtactcgtgcccaactcatatgcagccaccgtaacg |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226318 |
taacatacaacaaattggtatttaagagtctctattttatgatgcccacaatcactctacttcagtactcgtgcccaactcatatgcagccaccgtaacg |
33226417 |
T |
|
| Q |
301 |
ttaatcacacacacccctccatcatctcttgctgctttatgcacaccaaat |
351 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33226418 |
ttaatcacacacacacctccat-atctcttgctgctttatgcacaccaaat |
33226467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 39000547 - 39000885
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagctaaaac-gatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | | ||||| | |||||||||||||||| |||||||||||| | ||||||||||||||| | |
|
|
| T |
39000547 |
aattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtttggataccttcacaacaaaa-tgatttatataaaatattt |
39000645 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttatttatacatttgcttaacatataacaaattggt |
219 |
Q |
| |
|
|| | |||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
39000646 |
agtttggatagtttgaatcataattgcttttggatggacaaattattaaaatgggttttcacatttatttattcatttgcctaacatataacaaattgac |
39000745 |
T |
|
| Q |
220 |
atttaagagtctctattttatgatgcccacaa-----------tcactctacttca--gtactcgtgcccaactcatatgcagccaccgtaacgttaatc |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
39000746 |
atttaagagtctctattttatgttgcccgcaatcacctccctgtcactctacttcaatgtactcgtgccttactcatatgcagccaccgtaacattaat- |
39000844 |
T |
|
| Q |
307 |
acacacacccctccatcatctcttgctgctttatgcacacca |
348 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
39000845 |
-cacacactcctccatcatctcttgatgttttatgcacacca |
39000885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 5025615 - 5025483
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagctaaaac-gatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| || || || ||||||||||||| |||||||||||||||| | | ||||||| ||||||||||||||||||| |
|
|
| T |
5025615 |
aattgattttgtagaattgattttagttagaagtgagttgagcaaaaattgatttatgtttggatacctccctaacaaaagtaatttatataaaatatgt |
5025516 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgcttttgg |
152 |
Q |
| |
|
||| | |||||||||||||||||||| |||||| |
|
|
| T |
5025515 |
tgtttggatagtttgaatcaaaattgattttgg |
5025483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 31215372 - 31215606
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagctaaaac-gatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| || || | |||||||| ||| |||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
31215372 |
aattgatttaatagaatcgagtttagttaaaagtgagttaaacaaaaattgatt-atgtttggataccttcacaacaaaagtgatttatataaaatatgt |
31215470 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttatttatacatttgcttaacatataacaaattggt |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| || ||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
31215471 |
tgttcggatagtttgaatcaaaattgcttttggatggaaaaattactaaaatggggtttcaaatttatttatacatttgattaacatataataaattgac |
31215570 |
T |
|
| Q |
220 |
atttaagagtctctattttatgatgcccacaatcac |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31215571 |
atttaagagtctctattttatgatgcccacaatcac |
31215606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 43045216 - 43045296
Alignment:
| Q |
65 |
aaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattg |
145 |
Q |
| |
|
|||||||||||||||| ||||| || | |||||| | |||| ||| ||||||||||| | |||| |||| |||||||||| |
|
|
| T |
43045216 |
aaattaatttatgtttagatacctttattacaaaagtgatttgtatgaaatatgttgtttggatattttgtatcaaaattg |
43045296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 88 - 337
Target Start/End: Original strand, 16116710 - 16116963
Alignment:
| Q |
88 |
ttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttat |
187 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||| |||||||| |||||| |||||| |
|
|
| T |
16116710 |
ttcacaacaaaagtgacttatataaaatatgttgtacagatagtttgaatcaaaattgcttttgagcgggcaaattactaaaatgggttttcacatttat |
16116809 |
T |
|
| Q |
188 |
ttatacatttgcttaacatataacaaattggtatttaagagtctctattttatgatgcccacaatcactctactt-------cagtactcgtgcccaact |
280 |
Q |
| |
|
| |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| || ||| || |||||||||| ||| |
|
|
| T |
16116810 |
tcatacatttgcttaacatataacaaattgacaatgaagagtctctattttatgatgcccacaatcac-ctccttgtcgctccaatactcgtgccttact |
16116908 |
T |
|
| Q |
281 |
catatgcagccaccgtaacgttaatcacacacacccctccatcatctcttgctgctt |
337 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
16116909 |
catatgcagccaccgcaacattaat--cacactctcctccatcatctcttgctgctt |
16116963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 53078459 - 53078248
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagcta-aaacgatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
|||| ||||||||||||||| ||||| || ||| || |||| |||||||| ||||||||||||||| | | ||||||| | ||||||||||||||||| |
|
|
| T |
53078459 |
aattaattttgtagaattgattttagttagaaatgagttgaacaaaaattgatttatgtttggataactccctaacaaaagtgatttatataaaatatgt |
53078360 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttatttatacatttgcttaacatataacaaattggt |
219 |
Q |
| |
|
||| | || ||||||||||||||||| ||||||||| || ||| |||||||||| | | |||||||| || |||| |||||||||| |||||||| |
|
|
| T |
53078359 |
tgtttggacagtttgaatcaaaattgattttggatgtgtaaattactaaaatggatctcaacatttatttgtagattttcttaacatattacaaattgac |
53078260 |
T |
|
| Q |
220 |
atttaagagtct |
231 |
Q |
| |
|
||| |||||||| |
|
|
| T |
53078259 |
attgaagagtct |
53078248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 52736814 - 52736733
Alignment:
| Q |
71 |
atttatgtttggatactttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttgg |
152 |
Q |
| |
|
|||| |||||||||||||| |||| |||| | |||| ||| ||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
52736814 |
atttgtgtttggatacttttacaataaaagtgatttgtatgaaatatgttgtttagatattttgtgtcaaaattgcttttgg |
52736733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 25181260 - 25181179
Alignment:
| Q |
71 |
atttatgtttggatactttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttgg |
152 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | |||| | ||||||||||||| | |||| |||| ||||||||| |||||| |
|
|
| T |
25181260 |
atttatgtttggataccttcaccacaaaagtgatttgtttaaaatatgttgtttggatattttgtgtcaaaattgattttgg |
25181179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 41891819 - 41892029
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagctaaaac-gatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| || || || ||||||||||||| |||| |||||||||| | | |||||||| ||||||||||||||||| |
|
|
| T |
41891819 |
aattgattttgtagaattgattttagttagaagtgagttgagcaaaaattgatttgtgtttggataactccctgacaaaaatgatttatataaaatatgt |
41891918 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgcttttggatggacaagttattaaaatggattttcatatttatttatacatttgcttaacatataacaaattggt |
219 |
Q |
| |
|
||| | || ||||||||||||||||| ||||||||| || ||| |||||||| | | | |||||||| || |||| |||||||||| |||||||| |
|
|
| T |
41891919 |
tgtttggacagtttgaatcaaaattgattttggatgtgtaaattactaaaatgggtctcaacatttatttgtagattttcttaacatattacaaattgac |
41892018 |
T |
|
| Q |
220 |
atttaagagtc |
230 |
Q |
| |
|
||| ||||||| |
|
|
| T |
41892019 |
attgaagagtc |
41892029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 41408299 - 41408169
Alignment:
| Q |
21 |
aattgattttgtagaattgagtttagctaaaac-gatttgagcaaaaattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgt |
119 |
Q |
| |
|
|||| ||||||||||||||| ||||| || || || |||| ||||||| |||||| ||||||||| | | ||||||| | ||||||||||||||||| |
|
|
| T |
41408299 |
aattaattttgtagaattgattttagttagaagtgaattgaacaaaaatagatttatatttggatacctccctaacaaaagtgatttatataaaatatgt |
41408200 |
T |
|
| Q |
120 |
tgtctagatagtttgaatcaaaattgctttt |
150 |
Q |
| |
|
||| | ||||||| ||||||||||| |||| |
|
|
| T |
41408199 |
tgtttgaatagtttaaatcaaaattgatttt |
41408169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 16808 - 16858
Alignment:
| Q |
65 |
aaattaatttatgtttggatactttcacaacaaaaataatttatataaaat |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
16808 |
aaatgaatttatgttttgatactttcacaacaaaaataatttatacaaaat |
16858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 7015 - 6960
Alignment:
| Q |
66 |
aattaatttatgtttggatactttcacaacaaaaataatttatataaaatatgttgt |
122 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| | |||| ||||||||||||||| |
|
|
| T |
7015 |
aattaatttatgtttggatac-ttcaaaacaaaagtgatttgtataaaatatgttgt |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 23377563 - 23377479
Alignment:
| Q |
71 |
atttatgtttggatactttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttggatg |
155 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | ||| ||||||| ||||||| | ||| ||||||||| |||||||||| |||| |
|
|
| T |
23377563 |
atttatgtttggataccttcaaaacaaaagtgattagtataaaaaatgttgtttggatgttttgaatcagaattgcttttagatg |
23377479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 3853915 - 3853879
Alignment:
| Q |
115 |
tatgttgtctagatagtttgaatcaaaattgcttttg |
151 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
|
|
| T |
3853915 |
tatgttgtttggatagtttgaatcaaaattgcttttg |
3853879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 23359979 - 23360063
Alignment:
| Q |
71 |
atttatgtttggatactttcacaacaaaaataatttatataaaatatgttgtctagatagtttgaatcaaaattgcttttggatg |
155 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | ||| ||| ||| ||||||| | ||| ||||||||| |||||||||| |||| |
|
|
| T |
23359979 |
atttatgtttggataccttcaaaacaaaagtgattagtatgaaaaatgttgtttggatgttttgaatcagaattgcttttagatg |
23360063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 2366 - 2402
Alignment:
| Q |
118 |
gttgtctagatagtttgaatcaaaattgcttttggat |
154 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2366 |
gttgtttagatagtttgaatcaaaattgattttggat |
2402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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