View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_low_15 (Length: 357)

Name: NF18331_low_15
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_low_15
NF18331_low_15
[»] chr8 (35 HSPs)
chr8 (190-342)||(29023108-29023263)
chr8 (279-341)||(33627120-33627182)
chr8 (279-341)||(44926802-44926864)
chr8 (293-341)||(25698045-25698093)
chr8 (284-340)||(42148971-42149027)
chr8 (294-341)||(3097292-3097339)
chr8 (294-341)||(27649722-27649769)
chr8 (279-341)||(4941867-4941929)
chr8 (291-341)||(6399194-6399244)
chr8 (286-335)||(41289150-41289199)
chr8 (294-341)||(28425558-28425605)
chr8 (294-341)||(38152260-38152307)
chr8 (291-341)||(40742379-40742429)
chr8 (297-341)||(41981136-41981180)
chr8 (291-335)||(43550864-43550908)
chr8 (294-341)||(36114126-36114173)
chr8 (291-341)||(26125545-26125595)
chr8 (292-330)||(26243065-26243103)
chr8 (284-341)||(440275-440332)
chr8 (290-331)||(3619164-3619205)
chr8 (292-337)||(8124945-8124990)
chr8 (290-327)||(37458403-37458440)
chr8 (297-341)||(3467512-3467556)
chr8 (284-334)||(22936886-22936936)
chr8 (297-331)||(24297687-24297721)
chr8 (290-332)||(26575807-26575849)
chr8 (294-332)||(34342947-34342985)
chr8 (279-341)||(40742085-40742147)
chr8 (297-331)||(41408169-41408203)
chr8 (290-331)||(2026093-2026134)
chr8 (290-331)||(17073707-17073748)
chr8 (290-331)||(17574522-17574563)
chr8 (304-341)||(24897673-24897710)
chr8 (290-331)||(35801788-35801829)
chr8 (291-331)||(41891915-41891955)
[»] chr5 (38 HSPs)
chr5 (190-342)||(41740675-41740829)
chr5 (279-341)||(32454504-32454566)
chr5 (284-335)||(22482161-22482212)
chr5 (295-341)||(2430379-2430425)
chr5 (279-341)||(3667821-3667883)
chr5 (279-341)||(35760156-35760218)
chr5 (279-341)||(40495441-40495502)
chr5 (279-341)||(40885177-40885239)
chr5 (294-341)||(13253165-13253212)
chr5 (291-341)||(3060306-3060355)
chr5 (291-337)||(16843517-16843563)
chr5 (284-341)||(7714912-7714969)
chr5 (297-341)||(7386015-7386059)
chr5 (291-339)||(33953986-33954034)
chr5 (291-334)||(41834871-41834914)
chr5 (286-331)||(3747683-3747728)
chr5 (284-341)||(24045803-24045860)
chr5 (284-336)||(27021100-27021153)
chr5 (294-335)||(32030698-32030739)
chr5 (290-331)||(40979996-40980037)
chr5 (294-334)||(10058056-10058096)
chr5 (279-334)||(16158555-16158610)
chr5 (291-341)||(9275567-9275617)
chr5 (290-332)||(33082423-33082465)
chr5 (303-341)||(39988050-39988088)
chr5 (284-338)||(40791155-40791209)
chr5 (284-338)||(42146280-42146334)
chr5 (290-331)||(7071503-7071544)
chr5 (290-331)||(8957979-8958020)
chr5 (290-331)||(11017912-11017953)
chr5 (290-331)||(20069163-20069204)
chr5 (290-331)||(27738036-27738077)
chr5 (290-331)||(31906018-31906059)
chr5 (290-331)||(33386955-33386996)
chr5 (291-335)||(4292128-4292172)
chr5 (297-341)||(8049134-8049178)
chr5 (290-334)||(25256313-25256357)
chr5 (290-334)||(25320102-25320146)
[»] chr2 (34 HSPs)
chr2 (190-339)||(23358127-23358280)
chr2 (279-341)||(7472757-7472819)
chr2 (271-341)||(44619145-44619215)
chr2 (271-338)||(2215208-2215275)
chr2 (284-341)||(8170280-8170337)
chr2 (273-341)||(28127371-28127439)
chr2 (291-338)||(5916328-5916375)
chr2 (291-338)||(36312251-36312298)
chr2 (294-341)||(39141553-39141600)
chr2 (279-341)||(2213468-2213530)
chr2 (278-340)||(9988586-9988648)
chr2 (291-341)||(14821137-14821187)
chr2 (284-339)||(7295432-7295487)
chr2 (290-337)||(42516063-42516110)
chr2 (279-341)||(25940325-25940387)
chr2 (292-333)||(18511077-18511118)
chr2 (284-341)||(28261261-28261318)
chr2 (284-341)||(36548167-36548224)
chr2 (284-339)||(7296122-7296177)
chr2 (291-341)||(31562768-31562818)
chr2 (298-335)||(1945129-1945166)
chr2 (291-331)||(3853874-3853914)
chr2 (290-341)||(2234900-2234950)
chr2 (293-332)||(15283350-15283389)
chr2 (290-329)||(37640236-37640275)
chr2 (15-57)||(23357951-23357993)
chr2 (278-336)||(26208018-26208076)
chr2 (290-331)||(7474113-7474154)
chr2 (290-331)||(17481374-17481415)
chr2 (292-337)||(32501961-32502006)
chr2 (290-331)||(43341747-43341788)
chr2 (290-331)||(43695614-43695655)
chr2 (297-341)||(16467066-16467110)
chr2 (279-331)||(25747975-25748027)
[»] chr1 (32 HSPs)
chr1 (190-317)||(291816-291949)
chr1 (291-341)||(6464597-6464647)
chr1 (279-341)||(43728964-43729026)
chr1 (291-341)||(45710038-45710088)
chr1 (290-341)||(10470578-10470629)
chr1 (278-341)||(31223350-31223413)
chr1 (284-335)||(35569295-35569346)
chr1 (279-341)||(12468190-12468251)
chr1 (291-341)||(31933716-31933766)
chr1 (291-341)||(42850306-42850356)
chr1 (293-336)||(13931614-13931657)
chr1 (284-335)||(20800370-20800421)
chr1 (294-341)||(35536064-35536111)
chr1 (291-341)||(4369889-4369939)
chr1 (292-341)||(13055988-13056037)
chr1 (294-334)||(1199819-1199859)
chr1 (293-341)||(5410631-5410679)
chr1 (294-338)||(40229560-40229604)
chr1 (294-341)||(12247412-12247459)
chr1 (291-341)||(7826441-7826491)
chr1 (295-341)||(25230000-25230046)
chr1 (291-341)||(50977426-50977476)
chr1 (292-337)||(6166100-6166145)
chr1 (290-331)||(46033210-46033251)
chr1 (291-331)||(11051407-11051447)
chr1 (291-331)||(36205180-36205220)
chr1 (292-331)||(15884216-15884255)
chr1 (292-337)||(11023420-11023465)
chr1 (297-334)||(36118120-36118157)
chr1 (290-331)||(41512729-41512770)
chr1 (290-331)||(42137170-42137211)
chr1 (291-335)||(40821814-40821858)
[»] chr4 (46 HSPs)
chr4 (278-341)||(51922877-51922940)
chr4 (283-341)||(9893653-9893711)
chr4 (279-341)||(43781604-43781666)
chr4 (278-341)||(13183136-13183199)
chr4 (278-341)||(48550513-48550576)
chr4 (279-341)||(15603298-15603360)
chr4 (291-339)||(14072453-14072501)
chr4 (278-341)||(26651934-26651997)
chr4 (279-341)||(29149393-29149455)
chr4 (279-341)||(49136460-49136522)
chr4 (284-341)||(9889420-9889477)
chr4 (292-341)||(28986972-28987021)
chr4 (284-341)||(30842075-30842132)
chr4 (291-340)||(32238145-32238194)
chr4 (284-341)||(48407783-48407840)
chr4 (291-335)||(16566255-16566299)
chr4 (291-339)||(54152995-54153043)
chr4 (284-339)||(6505144-6505199)
chr4 (284-341)||(14564232-14564289)
chr4 (284-335)||(2175239-2175290)
chr4 (279-334)||(19592324-19592379)
chr4 (278-341)||(42944984-42945047)
chr4 (291-341)||(4954137-4954187)
chr4 (298-340)||(6138707-6138749)
chr4 (291-337)||(39636735-39636781)
chr4 (291-341)||(46830155-46830205)
chr4 (294-336)||(48908228-48908270)
chr4 (291-341)||(54735736-54735786)
chr4 (279-341)||(56241921-56241983)
chr4 (290-331)||(45106357-45106398)
chr4 (291-336)||(54655200-54655245)
chr4 (293-341)||(55638873-55638921)
chr4 (296-331)||(5025484-5025519)
chr4 (284-338)||(26426203-26426257)
chr4 (291-341)||(30887239-30887289)
chr4 (291-341)||(31520456-31520506)
chr4 (291-336)||(14054801-14054846)
chr4 (290-331)||(16202614-16202655)
chr4 (290-331)||(22605838-22605879)
chr4 (290-331)||(28963339-28963380)
chr4 (290-331)||(30417876-30417917)
chr4 (290-331)||(39733396-39733437)
chr4 (294-331)||(50523350-50523387)
chr4 (291-335)||(15619567-15619610)
chr4 (289-341)||(38693996-38694048)
chr4 (297-337)||(43772213-43772253)
[»] scaffold0369 (1 HSPs)
scaffold0369 (279-341)||(8402-8464)
[»] chr7 (30 HSPs)
chr7 (279-341)||(9456079-9456141)
chr7 (284-341)||(47301630-47301687)
chr7 (279-341)||(43738012-43738074)
chr7 (291-341)||(48134566-48134616)
chr7 (293-341)||(3342778-3342826)
chr7 (294-341)||(34010329-34010376)
chr7 (294-341)||(34366054-34366101)
chr7 (291-337)||(3622537-3622583)
chr7 (291-341)||(12632156-12632206)
chr7 (278-340)||(37562543-37562605)
chr7 (295-341)||(44967472-44967518)
chr7 (297-341)||(3750678-3750722)
chr7 (291-335)||(38230054-38230098)
chr7 (292-335)||(10372037-10372080)
chr7 (294-341)||(39391210-39391257)
chr7 (284-335)||(47217620-47217671)
chr7 (290-331)||(4035919-4035960)
chr7 (290-331)||(40903250-40903291)
chr7 (294-341)||(34011034-34011082)
chr7 (291-335)||(37639416-37639460)
chr7 (294-341)||(19095926-19095972)
chr7 (279-330)||(37886854-37886905)
chr7 (297-336)||(39977544-39977583)
chr7 (291-334)||(47021905-47021948)
chr7 (291-341)||(3375476-3375526)
chr7 (297-334)||(386560-386597)
chr7 (290-331)||(26826952-26826993)
chr7 (290-331)||(41065340-41065381)
chr7 (281-338)||(43631771-43631828)
chr7 (279-331)||(42752274-42752326)
[»] chr6 (12 HSPs)
chr6 (279-341)||(13739159-13739221)
chr6 (279-341)||(13744659-13744721)
chr6 (279-341)||(29409337-29409399)
chr6 (291-335)||(16548104-16548148)
chr6 (291-335)||(17830090-17830134)
chr6 (294-341)||(31132432-31132479)
chr6 (291-341)||(6208148-6208198)
chr6 (278-340)||(16442437-16442499)
chr6 (291-341)||(33899091-33899141)
chr6 (297-341)||(10826062-10826106)
chr6 (290-331)||(31745486-31745527)
chr6 (291-331)||(2935695-2935735)
[»] chr3 (42 HSPs)
chr3 (280-341)||(31618973-31619034)
chr3 (278-337)||(16246184-16246243)
chr3 (291-341)||(10853353-10853403)
chr3 (291-341)||(20813111-20813161)
chr3 (279-341)||(53179802-53179863)
chr3 (284-341)||(42318288-42318345)
chr3 (284-341)||(48189527-48189584)
chr3 (278-341)||(10334090-10334153)
chr3 (284-335)||(23496282-23496333)
chr3 (278-341)||(38172393-38172456)
chr3 (291-341)||(3348208-3348258)
chr3 (291-341)||(35425299-35425349)
chr3 (284-341)||(38125527-38125584)
chr3 (295-341)||(8424815-8424861)
chr3 (279-341)||(26519617-26519679)
chr3 (291-341)||(30811617-30811667)
chr3 (291-341)||(35930703-35930753)
chr3 (291-341)||(44224727-44224777)
chr3 (291-341)||(44939500-44939550)
chr3 (292-341)||(15511461-15511510)
chr3 (292-341)||(53074869-53074918)
chr3 (279-331)||(50664712-50664764)
chr3 (291-341)||(22736946-22736996)
chr3 (291-341)||(52966895-52966945)
chr3 (290-331)||(30811288-30811329)
chr3 (299-336)||(55087593-55087630)
chr3 (294-341)||(23207153-23207199)
chr3 (291-341)||(14959684-14959734)
chr3 (279-337)||(21224943-21225001)
chr3 (290-332)||(33329436-33329478)
chr3 (297-331)||(37698485-37698519)
chr3 (291-341)||(38340771-38340821)
chr3 (290-332)||(44610311-44610352)
chr3 (290-331)||(11264277-11264318)
chr3 (290-331)||(28884258-28884299)
chr3 (290-331)||(39252061-39252102)
chr3 (290-331)||(42074914-42074955)
chr3 (290-331)||(45423864-45423905)
chr3 (290-331)||(48253974-48254015)
chr3 (290-331)||(51230284-51230325)
chr3 (293-341)||(31084175-31084223)
chr3 (291-331)||(53078323-53078363)
[»] scaffold0007 (1 HSPs)
scaffold0007 (291-341)||(29208-29258)
[»] scaffold0381 (1 HSPs)
scaffold0381 (284-341)||(9069-9126)
[»] scaffold0217 (1 HSPs)
scaffold0217 (293-334)||(2120-2161)
[»] scaffold0005 (1 HSPs)
scaffold0005 (284-341)||(253086-253143)
[»] scaffold0041 (1 HSPs)
scaffold0041 (290-331)||(46727-46768)
[»] scaffold0394 (1 HSPs)
scaffold0394 (291-335)||(5918-5967)
[»] scaffold0184 (1 HSPs)
scaffold0184 (290-331)||(9254-9295)
[»] scaffold0097 (1 HSPs)
scaffold0097 (290-331)||(32541-32582)
[»] scaffold0003 (1 HSPs)
scaffold0003 (290-331)||(301745-301786)
[»] scaffold0983 (1 HSPs)
scaffold0983 (296-336)||(2359-2399)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 190 - 342
Target Start/End: Original strand, 29023108 - 29023263
Alignment:
Q  190 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnn---gacaaaatataagaaattctatatttaggggcgtttgatca 286  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| |||    
T  29023108 atcactacacgttaaaaaatacagctttggcaaatgtgatataattgttttttttttttgacaaaatataagaaattctatttttaggggtgtttggtca 29023207  T
Q  287 ttttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataac 342  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29023208 ttttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataac 29023263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 33627182 - 33627120
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  33627182 tttgataattttacattcaaaatcgattttgattcaaactatccaaacaacattaactcataa 33627120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 44926802 - 44926864
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  44926802 tttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataa 44926864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 25698093 - 25698045
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25698093 attcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 25698045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 42148971 - 42149027
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcata 42149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 3097339 - 3097292
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3097339 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 3097292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 27649722 - 27649769
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27649722 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 27649769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 4941929 - 4941867
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  4941929 tttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataa 4941867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 6399244 - 6399194
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  6399244 acattcaaaatcaattttgattaaaattatccaaacaacatcaactcataa 6399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 41289199 - 41289150
Alignment:
Q  286 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  41289199 attttgcattcaaaatcaattttgattcaaactatccaaacaacatcaac 41289150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 28425605 - 28425558
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28425605 ttcaaaatcaattttgattcaaactatccaaacaacgtcaactcataa 28425558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 38152307 - 38152260
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38152307 ttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataa 38152260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 40742429 - 40742379
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  40742429 acatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataa 40742379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 41981136 - 41981180
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  41981136 aaaatcaattttgattcaaagtatccaaacaacatcaactcataa 41981180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 43550864 - 43550908
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  43550864 acattcaaaatcaattttgattcaaattatccaaacaacatcaac 43550908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 36114173 - 36114126
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  36114173 ttcaaaatcaattttgattcaaattatccaaacaatatcaactcataa 36114126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 26125545 - 26125595
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||||||||  ||||||||  ||||||||||||    
T  26125545 acattcaaaatcaattttgatttaaaccgtccaaacattatcaactcataa 26125595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 26243065 - 26243103
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaaca 330  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26243065 cattcaaaatcaattttgattcaaactatccaaacaaca 26243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 440332 - 440275
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||| | |||||||||    
T  440332 tcattatacattcaaaatcagttttgattcaatctatccaaacaacgttaactcataa 440275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 3619205 - 3619164
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  3619205 tacatttaaaatcaattttgattcaaactatccaaacaacat 3619164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 8124945 - 8124990
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||    
T  8124945 catttaaaatcaattttgattcaaactatccaaacaacttcaactc 8124990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 37458440 - 37458403
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaaca 327  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37458440 tacattcaaaatcaattttgattcaaactatccaaaca 37458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 3467512 - 3467556
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||    
T  3467512 aaaatcaattttgattcaaactatccaaccaacatcaattcataa 3467556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 22936936 - 22936886
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||| || |||||||| ||| ||||||| |||||||||||||||||||||    
T  22936936 tcattatatattcaaaaccaaatttgattcaaactatccaaacaacatcaa 22936886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 24297721 - 24297687
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||| ||||||||||||||||||    
T  24297721 aaaatcaattttgattcaaactatccaaacaacat 24297687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 26575807 - 26575849
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  26575807 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 26575849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 34342985 - 34342947
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  34342985 ttcaaaatcaattttgattcaaattatccaaacaacatc 34342947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 40742085 - 40742147
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||  |||||||||||||| ||| ||| |||  |||||||||| ||||||||||||    
T  40742085 tttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataa 40742147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 41408169 - 41408203
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||||||||||| ||||||||||    
T  41408169 aaaatcaattttgatttaaactattcaaacaacat 41408203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 2026093 - 2026134
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  2026093 tacattcaaaatcaattttttttaaaactatccaaacaacat 2026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 17073748 - 17073707
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17073748 tacattcaaaaacaattttgataaaaactatccaaacaacat 17073707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 17574522 - 17574563
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17574522 tacattcaaaaacaattttgataaaaactatccaaacaacat 17574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 24897710 - 24897673
Alignment:
Q  304 attttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataa 24897673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 35801829 - 35801788
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  35801829 tacattcaaaaacaattttgataaaaactatccaaacaacat 35801788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 41891955 - 41891915
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  41891955 acatccaaaatcaattttgattcaaactgtccaaacaacat 41891915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 41740829 - 41740675
Alignment:
Q  190 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnn--gacaaaatataagaaattctatatttaggggcgtttgatcat 287  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| ||||    
T  41740829 atcactacacgttaaaaaatacagctttgacaaatgtgatataattttttatttttttgacaaaatataagaaattctatgtttaggggtgtttggtcat 41740730  T
Q  288 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataac 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41740729 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataac 41740675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 32454504 - 32454566
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  32454504 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 32454566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 22482161 - 22482212
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  22482161 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaac 22482212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 2430425 - 2430379
Alignment:
Q  295 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  2430425 tcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 2430379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 3667821 - 3667883
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  3667821 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataa 3667883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 35760156 - 35760218
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  35760156 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataa 35760218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 40495502 - 40495441
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  40495502 tttgatcattgtacattccaaatcaattttgatttaaactattcaaacaa-atcaactcataa 40495441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 40885177 - 40885239
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||  | |||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  40885177 tttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataa 40885239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 13253212 - 13253165
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  13253212 ttcaaaatcaattttgattcaaactattcaaacaacatcaactcataa 13253165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 3060355 - 3060306
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  3060355 acattcaaaatcaattttgattcaaactatccaaacaacat-aactcataa 3060306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 16843517 - 16843563
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||    
T  16843517 acattcaaaatcaattatcatttaaactatccaaacaacatcaactc 16843563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 7714912 - 7714969
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  7714912 tcattatactttcaaaatcaattttaattcaaactatccaaacaacatcaacttataa 7714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 7386059 - 7386015
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  7386059 aaaagcaattttgatttaaattatccaaacaacatcaactcataa 7386015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 33954034 - 33953986
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  33954034 acattcaaaattaattttgattcaaactatccgaacaacatcaactcat 33953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 41834871 - 41834914
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  41834871 acattcaaaatcaattttcattcaaactatccaaacaacatcaa 41834914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 3747728 - 3747683
Alignment:
Q  286 attttacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  3747728 attttacatgtaaaatcaattttgattaaaactatccaaacaacat 3747683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 24045803 - 24045860
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  24045803 tcattgtacgttcaaaatcaattttaattcaaattatccaaacaacatcaacccataa 24045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 27021100 - 27021153
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaac-tatccaaacaacatcaact 336  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||||||||||    
T  27021100 tcattatacattcaaaatcaattttgattcaatcttatccaaacaacatcaact 27021153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 32030698 - 32030739
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  32030698 ttcaaaatcaattttgattcaaactattcaaacaacatcaac 32030739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 40979996 - 40980037
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  40979996 tacattcaaaatcaattttgatcaaaactatccaaacaacat 40980037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 10058056 - 10058096
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  10058056 ttcaaaatcaattttcattcaaactatccaaacaacatcaa 10058096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 16158610 - 16158555
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||  |||||||||||||||||||||| |||  ||||||| ||||||||    
T  16158610 tttgatcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaa 16158555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 9275617 - 9275567
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||| ||| ||| |||  |||||||||||||||||||||||    
T  9275617 acattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataa 9275567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 33082465 - 33082423
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33082465 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 33082423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 39988088 - 39988050
Alignment:
Q  303 aattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  39988088 aattttgatttaaatcatccaaacaacatcaactcataa 39988050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 40791209 - 40791155
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  40791209 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactca 40791155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 42146280 - 42146334
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  42146280 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactca 42146334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 7071544 - 7071503
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7071544 tacattcaaaaacaattttgatcaaaactatccaaacaacat 7071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 8958020 - 8957979
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  8958020 tacattcaaaagcaattttgataaaaactatccaaacaacat 8957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 11017953 - 11017912
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11017953 tacattcaaaaacaattttgatgaaaactatccaaacaacat 11017912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 20069204 - 20069163
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  20069204 tacattcaaaaacaattttgatcaaaactatccaaacaacat 20069163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 27738077 - 27738036
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  27738077 tacattcaaaagcaattttgataaaaactatccaaacaacat 27738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 31906018 - 31906059
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31906018 tacattcaaaagcaattttgataaaaactatccaaacaacat 31906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 33386996 - 33386955
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  33386996 tacattcaaaaacaattttgatcaaaactatccaaacaacat 33386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 4292128 - 4292172
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||    
T  4292128 acattcaaaattaattttgattcaaattatccaaacaatatcaac 4292172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 8049178 - 8049134
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||  |||||||||||| ||||||||||    
T  8049178 aaaagcaattttgatttaaatcatccaaacaacaacaactcataa 8049134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 25256357 - 25256313
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25256357 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25256313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 25320146 - 25320102
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25320146 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25320102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 339
Target Start/End: Original strand, 23358127 - 23358280
Alignment:
Q  190 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnn----gacaaaatataagaaattctatatttaggggcgtttgatc 285  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||             |  |||||| || ||||||||  |||||||| ||||| ||    
T  23358127 atcactacacgttaaaaaatacagctttggtaaatgtgatataattgttttttttttgttggaaaaatacaacaaattctacgtttaggggtgtttggtc 23358226  T
Q  286 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23358227 attttacattcaaaatcaattttgattcaaactatccaaacaacattaactcat 23358280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 7472819 - 7472757
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7472819 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 7472757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 44619215 - 44619145
Alignment:
Q  271 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  44619215 taggggtgtttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataa 44619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 2215208 - 2215275
Alignment:
Q  271 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    |||||| ||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  2215208 taggggtgtttggtcattttacattcaaaatcaattctaatttaaattatccaaacaacatcaactca 2215275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 8170280 - 8170337
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8170280 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 8170337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 28127439 - 28127371
Alignment:
Q  273 ggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  28127439 ggggtgtttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataa 28127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 5916375 - 5916328
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5916375 acattcaaaatcaattttgattcaaactatccaaacaacatcaactca 5916328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 36312251 - 36312298
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  36312251 acattcaaaatcaattttgattcaaactatccaaacaacatcaactca 36312298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 39141600 - 39141553
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39141600 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 39141553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 2213468 - 2213530
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  2213468 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataa 2213530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 9988648 - 9988586
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  9988648 gtttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcata 9988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 14821137 - 14821187
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14821137 acattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataa 14821187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 7295487 - 7295432
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  7295487 tcattatatattcaaaatcaagtttgacttaaactatccaaacaacatcaactcat 7295432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 42516110 - 42516063
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  42516110 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactc 42516063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 25940387 - 25940325
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  25940387 tttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataa 25940325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 18511077 - 18511118
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatca 333  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18511077 cattcaaaatcaattttgatttaaattatccaaacaacatca 18511118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 28261261 - 28261318
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||| ||||| |||||||||| ||||||| ||||||||||||||||||||    
T  28261261 tcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataa 28261318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 36548167 - 36548224
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||| ||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  36548167 tcattgtacgttcaaaatcaattttaatttaaattatccaaacaacatcaacccataa 36548224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 7296122 - 7296177
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    ||||| || |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  7296122 tcattatatattcaaaatcaattttgacttaaactatccaaataacatcaagtcat 7296177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 31562818 - 31562768
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||| ||||||||||| || |||||||||    
T  31562818 acattcaaaatcaattttgattcaaattatccaaacaatataaactcataa 31562768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 1945166 - 1945129
Alignment:
Q  298 aaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaac 1945129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 3853874 - 3853914
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  3853874 acattcaaaagcaattttgattcaaactatccaaacaacat 3853914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 2234900 - 2234950
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||| ||||| |||||||||| |||||||||||||||||| |||||||||    
T  2234900 tacatttaaaattaattttgattcaaactatccaaacaacat-aactcataa 2234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 15283389 - 15283350
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  15283389 attcaaaatcaattttaatctaaactatccaaacaacatc 15283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 37640275 - 37640236
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaac 329  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  37640275 tacattcaaaatcaattttgataaaaactatccaaacaac 37640236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 23357951 - 23357993
Alignment:
Q  15 gaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 57  Q
    ||||||||||||||| |||||||||| |||||| |||||||||    
T  23357951 gaagaaggttgtggagaaatggaagggatatgccgaaactgag 23357993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 26208076 - 26208018
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    ||||| ||||| |||||| |||||||||||||||| | |  ||||||||||||||||||    
T  26208076 gtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaact 26208018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 7474113 - 7474154
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7474113 tacattcaaaagcaattttgataaaaactatccaaacaacat 7474154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 17481374 - 17481415
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17481374 tacattcaaaagcaattttgataaaaactatccaaacaacat 17481415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 32501961 - 32502006
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32501961 catttaaaatcaattttgattcaaactacccaaacaatatcaactc 32502006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 43341788 - 43341747
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43341788 tacattcaaaagcaattttgataaaaactatccaaacaacat 43341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 43695614 - 43695655
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43695614 tacattcaaaaacaattttgatcgaaactatccaaacaacat 43695655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 16467066 - 16467110
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||| |||||||||||||| |||||||| |||||    
T  16467066 aaaattaattttgatctaaactatccaaactacatcaacccataa 16467110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 25748027 - 25747975
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||| ||| ||| ||||||| ||||||||||| |||||| |||||||||||    
T  25748027 tttgataattatactttcaaaagcaattttgattcaaactacccaaacaacat 25747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 317
Target Start/End: Complemental strand, 291949 - 291816
Alignment:
Q  190 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnn------gacaaaatataagaaattctatatttaggggcgtttga 283  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||               || ||||||||||||||||||| |||||||| |||||     
T  291949 atcactacaggttaaaaaatacagctttggcaaatgtgatataattgtttttttttttttttgataaaatataagaaattctatgtttaggggtgtttgg 291850  T
Q  284 tcattttacattcaaaatcaattttgatttaaac 317  Q
    ||||||||||||||||||||||||||||| ||||    
T  291849 tcattttacattcaaaatcaattttgattcaaac 291816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 6464597 - 6464647
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6464597 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 6464647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 43729026 - 43728964
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43729026 tttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 43728964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 45710038 - 45710088
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45710038 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 45710088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 10470578 - 10470629
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10470578 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 10470629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 31223350 - 31223413
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||  |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  31223350 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 31223413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 35569346 - 35569295
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  35569346 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaac 35569295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 12468190 - 12468251
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  12468190 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaa-atcaactcataa 12468251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 31933716 - 31933766
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31933716 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataa 31933766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 42850356 - 42850306
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  42850356 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataa 42850306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 13931614 - 13931657
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  13931614 attcaaaatcaattttgattcaaactatccaaacaacatcaact 13931657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 20800421 - 20800370
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||    
T  20800421 tcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaac 20800370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 35536064 - 35536111
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35536064 ttcaaaatcaattttgattcaaattatccaaacaacatcaactcataa 35536111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 4369939 - 4369889
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  4369939 acatttaaaatcaattttgattcaacctatccaaacaacatcaactcataa 4369889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 13055988 - 13056037
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  13055988 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataa 13056037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 1199819 - 1199859
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  1199819 ttcaaaatcaattttgattcaaactatccaaacaacatcaa 1199859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 5410631 - 5410679
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  5410631 attcaaaatcaattatgattcaaactatccaaacaacatcaagtcataa 5410679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 40229604 - 40229560
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||    
T  40229604 ttcaaaatcaattttgattcaaattatccaaacaacatcaactca 40229560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 12247412 - 12247459
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  12247412 ttcaaaatcaattttgattcaaattctccaaacaacatcaactcataa 12247459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 7826491 - 7826441
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||||| || |||||||||||||||||| ||||||    
T  7826491 acatttaaaatcaattttgattcaacctatccaaacaacatcaattcataa 7826441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 25230000 - 25230046
Alignment:
Q  295 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  25230000 tcaaaatcaattttcattcaaactatccaaacaacatcaactaataa 25230046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 50977476 - 50977426
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  50977476 acattcaaaatcaatttttattcaaactatccaaacaatatctactcataa 50977426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 6166100 - 6166145
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||    
T  6166100 catttaaaatcaattttgattcaaactacccaaacaacatcaactc 6166145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 46033251 - 46033210
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  46033251 tacattcaaaatcaattttgataaaaactatccaaacaacat 46033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 11051447 - 11051407
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  11051447 acattcaaaatcaatttttattcaaactatccaaacaacat 11051407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 36205180 - 36205220
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  36205180 acattcaaaatcaattttgattcaaactatccaagcaacat 36205220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 15884216 - 15884255
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  15884216 cattcaaaatcaattttgatccaaactatccaaacaacat 15884255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 11023465 - 11023420
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||| |||||||||||||||| |||||| |||||||| ||||||||    
T  11023465 catttaaaatcaattttgattcaaactacccaaacaatatcaactc 11023420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 36118120 - 36118157
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  36118120 aaaatcaattttggtttaaactatccaaacaatatcaa 36118157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 41512729 - 41512770
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  41512729 tacattcaaaatcaattttgatcaaaacaatccaaacaacat 41512770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 42137211 - 42137170
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42137211 tacattcaaaagcaattttgatcaaaactatccaaacaacat 42137170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 40821814 - 40821858
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||||||| |||||||||||| ||| |||||||| |||||||||    
T  40821814 acattcaaactcaattttgattcaaattatccaaataacatcaac 40821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 51922877 - 51922940
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51922877 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 51922940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 9893653 - 9893711
Alignment:
Q  283 atcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9893653 atcattatacattcaaaatcaattttaatttaaactatccaaacaacatcaactcataa 9893711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 43781666 - 43781604
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43781666 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 43781604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 13183199 - 13183136
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  13183199 gtttggtcattttacattcaaaatcaattttgatttaaattatccaaaaaacatcaacttataa 13183136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 48550576 - 48550513
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  48550576 gtttgatcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataa 48550513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 15603298 - 15603360
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15603298 tttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcataa 15603360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 14072453 - 14072501
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14072453 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcat 14072501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 26651997 - 26651934
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  26651997 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataa 26651934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 29149455 - 29149393
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||    
T  29149455 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataa 29149393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 49136460 - 49136522
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  49136460 tttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcataa 49136522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 9889477 - 9889420
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9889477 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9889420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 28986972 - 28987021
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  28986972 catttaaaatcaattttgattcaaactatccaaacaacatcaactcataa 28987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 30842075 - 30842132
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||    
T  30842075 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataa 30842132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 32238194 - 32238145
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  32238194 acattcaaaatcagttttgattcaaactatccaaacaacatcaactcata 32238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 48407840 - 48407783
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||    
T  48407840 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataa 48407783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 16566255 - 16566299
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  16566255 acattcaaaatcaattttgattcaaactatccaaacaacatcaac 16566299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 54152995 - 54153043
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  54152995 acattcaaaatcaattttgattcaaactattcaaacaacatcaactcat 54153043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 6505144 - 6505199
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 339  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6505144 tcattatatattcaaaatcaattttgacttaaactatccaaacaacatcaagtcat 6505199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 14564289 - 14564232
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| |||||||||    
T  14564289 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataa 14564232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 2175290 - 2175239
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  2175290 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaac 2175239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 19592379 - 19592324
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    |||| ||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  19592379 tttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaa 19592324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 42945047 - 42944984
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||| |||||| |||||||||||||||  | |||||||||||||||||||| |||||    
T  42945047 gtttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataa 42944984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 4954187 - 4954137
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||| |||||||||| || |||||||||||||||||||||||||    
T  4954187 acatttaaaattaattttgattcaacctatccaaacaacatcaactcataa 4954137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 6138749 - 6138707
Alignment:
Q  298 aaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  6138749 aaatcaattttcattcaaactatccaaacaacatcaactcata 6138707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 39636735 - 39636781
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  39636735 acatttaaaatcaattttgattcatactatccaaacaacatcaactc 39636781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 46830205 - 46830155
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||| || | ||||||||||||||||||||||||    
T  46830205 acatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataa 46830155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 48908228 - 48908270
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  48908228 ttcaaaatcaattttgattcaagctatccaaacaacatcaact 48908270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 54735786 - 54735736
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  54735786 acattcaagatcaattttgatttaaaatactcaaacaacatcaactcataa 54735736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 56241983 - 56241921
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| |||||||||||||||||||||||||||  ||| |||||  ||||||||||||    
T  56241983 tttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataa 56241921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 45106357 - 45106398
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  45106357 tacattcaaaatcaattttgataaaaactatccaaacaacat 45106398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 54655200 - 54655245
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  54655200 acatccaaaatcaattttaatttaaagtatccaaacaacatcaact 54655245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 55638921 - 55638873
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  55638921 attcaaaatcaattttgattcatattatccaaacaatatcaactcataa 55638873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 5025484 - 5025519
Alignment:
Q  296 caaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5025484 caaaatcaattttgattcaaactatccaaacaacat 5025519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 26426257 - 26426203
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  26426257 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactca 26426203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 30887289 - 30887239
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||  |||| ||||||||| ||| |||||||||    
T  30887289 acattcaaaatcaattttgatacaaaccatccaaacatcattaactcataa 30887239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 31520506 - 31520456
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||| ||| |||||| ||||| |||||||||||||||    
T  31520506 acatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataa 31520456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 14054801 - 14054846
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  14054801 acatccaaaatcaattttaatttaaagtattcaaacaacatcaact 14054846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 16202655 - 16202614
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  16202655 tacattcaaaagcaattttgatcaaaactatccaaacaacat 16202614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 22605879 - 22605838
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  22605879 tacattcaaaagcaattttgataaaaactatccaaacaacat 22605838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 28963380 - 28963339
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  28963380 tacattcaaaagcaattttgataaaaactatccaaacaacat 28963339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 30417917 - 30417876
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  30417917 tacattcaaaagcaattttgataaaaactatccaaacaacat 30417876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 39733396 - 39733437
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  39733396 tacattcaaaattaattttgatcaaaactatccaaacaacat 39733437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 50523387 - 50523350
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  50523387 ttcaaaatcaattttgatcaaaactatccaaacaacat 50523350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 15619567 - 15619610
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||    
T  15619567 acattcaagatca-ttttgattcaaactatccaaacaacatcaac 15619610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 38693996 - 38694048
Alignment:
Q  289 ttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||| |||||||||||||| ||| ||| ||| |||||| |||||    
T  38693996 ttacattcaaaattaattttgatttaaattattcaagcaagatcaacccataa 38694048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 43772253 - 43772213
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  43772253 aaaatcaattttgattcatattatccaaacaacatcaactc 43772213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 8402 - 8464
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8402 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 8464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 9456079 - 9456141
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  9456079 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaagatcaactcataa 9456141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 47301687 - 47301630
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  47301687 tcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaacccataa 47301630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 43738074 - 43738012
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  43738074 tttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataa 43738012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 48134566 - 48134616
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  48134566 acattcaaaatcaattttgattcaaactatccaaacaacatcaacttataa 48134616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 3342778 - 3342826
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  3342778 attcaaaatcaattttgattcaaactattcaaacaacatcaactcataa 3342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 34010329 - 34010376
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  34010329 ttcaaaattaattttgattcaaactatccaaacaacatcaactcataa 34010376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 34366101 - 34366054
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  34366101 ttcaaaatcaatttttattcaaactatccaaacaacatcaactcataa 34366054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 3622583 - 3622537
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  3622583 acatttaaaatcaattttgatttatactatccaaacaacatcaactc 3622537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 12632206 - 12632156
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  12632206 acattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataa 12632156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 37562543 - 37562605
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||| |||||  |||| ||||||||||||| ||| |||||||||||||||||||||||||||    
T  37562543 gtttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcata 37562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 44967518 - 44967472
Alignment:
Q  295 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  44967518 tcaaaatcaattttgattcaaattatccaaacaacatcaactcataa 44967472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 3750678 - 3750722
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  3750678 aaaattaattttgatttaaactatccaaacaacatcaattcataa 3750722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 38230054 - 38230098
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  38230054 acatttaaaatcaattttgattcaaactatccaaacaacatcaac 38230098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 10372080 - 10372037
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  10372080 cattcaaaatcaattttgattcaaactatccgaacaacatcaac 10372037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 39391257 - 39391210
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  39391257 ttcaaaatcaattttgattcaaactattcaaacaacatcaattcataa 39391210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 47217671 - 47217620
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  47217671 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaac 47217620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 4035919 - 4035960
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  4035919 tacattcaaaagcaattttgattaaaactatccaaacaacat 4035960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 40903291 - 40903250
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  40903291 tacatccaaaatcaattttgatttgaactatccaaacaacat 40903250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 34011082 - 34011034
Alignment:
Q  294 ttcaaaatcaattttgatttaaacta-tccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  34011082 ttcaaaatcaattttgatttaaagtaccccaaacaacatcaactcataa 34011034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 37639416 - 37639460
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||||    
T  37639416 acatttaaaattaattttgattcaaactatccaaacaacatcaac 37639460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 19095926 - 19095972
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  19095926 ttcaaaatcaattttgattcaaattatccaaacaacat-aactcataa 19095972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 37886905 - 37886854
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaaca 330  Q
    |||||| ||| || ||| |||||||||||||||| |||||||||||||||||    
T  37886905 tttgataattatatatttaaaatcaattttgattcaaactatccaaacaaca 37886854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 39977544 - 39977583
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  39977544 aaaatcaattttaatttaaagtatccaaacaacatcaact 39977583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 47021905 - 47021948
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||    
T  47021905 acattcaaaatcaattttcattcaaattatccaaacaacatcaa 47021948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 3375476 - 3375526
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||  |||  |||||||||||||| ||||||||    
T  3375476 acattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataa 3375526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 386597 - 386560
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    |||||||||||||||| || ||||||||||||||||||    
T  386597 aaaatcaattttgattcaatctatccaaacaacatcaa 386560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 26826952 - 26826993
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  26826952 tacattcaaaagcaattttgataaaaactatccaaacaacat 26826993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 41065340 - 41065381
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  41065340 tacattcaaaagcaattttgatcaaaactatccaaacaacat 41065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 43631828 - 43631771
Alignment:
Q  281 tgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 338  Q
    |||| ||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  43631828 tgataattatacattcacaatcaattttgattcaatatatccaaacaatatcaactca 43631771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 42752326 - 42752274
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||| ||| | |||||||||||||||||||| |||  ||||||||||||||    
T  42752326 tttgataattatgcattcaaaatcaattttgatctaagttatccaaacaacat 42752274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 13739159 - 13739221
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  13739159 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 13739221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 13744659 - 13744721
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  13744659 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 13744721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 29409399 - 29409337
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  29409399 tttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 29409337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 16548104 - 16548148
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  16548104 acattcaaaatcaattttgattcaaactatccaaacaacatcaac 16548148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 17830134 - 17830090
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  17830134 acattcaaaatcaattttgattcaaactatccaaacaacatcaac 17830090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 31132432 - 31132479
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31132432 ttcaaaatcaattttgattcaaactatccaaacaacatcaacccataa 31132479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 6208198 - 6208148
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  6208198 acattcaaaattaattttgattcaaactatctaaacaacatcaactcataa 6208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 16442499 - 16442437
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 340  Q
    ||||| |||||  |||||||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  16442499 gtttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcata 16442437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 33899141 - 33899091
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||| |||||||||  || |||||||||    
T  33899141 acattcaaaatcaattttgatttaaaccatccaaacattattaactcataa 33899091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 10826062 - 10826106
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||    
T  10826062 aaaattaattttgattcaaactatccaaacaaaatcaactcataa 10826106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 31745527 - 31745486
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31745527 tacattcaaaagcaattttgatcaaaactatccaaacaacat 31745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 2935735 - 2935695
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  2935735 acattcaaaaacaattttgatctaaattatccaaacaacat 2935695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 31619034 - 31618973
Alignment:
Q  280 ttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  31619034 ttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataa 31618973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 16246243 - 16246184
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  16246243 gtttgatcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactc 16246184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 10853403 - 10853353
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10853403 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 10853353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 20813111 - 20813161
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20813111 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 20813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 53179802 - 53179863
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53179802 tttggtcattgtacattcaaaatcaattttgatttaaactatccaaacaa-atcaactcataa 53179863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 42318288 - 42318345
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  42318288 tcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcataa 42318345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 48189584 - 48189527
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48189584 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 48189527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 10334090 - 10334153
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||| || |||||||||||||||||||| |||||||||||||||| |||||||||||    
T  10334090 gtttggtcattataaattcaaaatcaattttgattcaaactatccaaacaacgtcaactcataa 10334153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 23496282 - 23496333
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 335  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  23496282 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaac 23496333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 38172456 - 38172393
Alignment:
Q  278 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||  |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  38172456 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 38172393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 3348208 - 3348258
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  3348208 acattcaaaatcaattttgatataaaatatccaaacaacatcaactcataa 3348258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 35425299 - 35425349
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  35425299 acattcaaaatcaattttgattcaaactatccaaacaatatcaactcataa 35425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 38125584 - 38125527
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||    
T  38125584 tcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcataa 38125527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 8424861 - 8424815
Alignment:
Q  295 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  8424861 tcaaaatcaattttgattcaaactattcaaacaacatcaactcataa 8424815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 26519617 - 26519679
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||| ||||||||||||| || ||||||||||||||| ||||||| ||||    
T  26519617 tttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataa 26519679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 30811667 - 30811617
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  30811667 acattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataa 30811617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 35930703 - 35930753
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  35930703 acattcaaaatcaattttgatttaaaccatccaaacattatcaactcataa 35930753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 44224727 - 44224777
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  44224727 acattcaaaatcaattttgactaaaattatccaaacaacatcaactcataa 44224777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 44939550 - 44939500
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  44939550 acattcaaaattaattttgattaaaactattcaaacaacatcaactcataa 44939500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 15511510 - 15511461
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  15511510 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataa 15511461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 53074869 - 53074918
Alignment:
Q  292 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  53074869 catttaaaatcaattttgattcaaactatccaaacaacatccactcataa 53074918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 50664712 - 50664764
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  50664712 tttgatcattacacattcaaaatcaattttaatttaaactatctaaacaacat 50664764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 22736946 - 22736996
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| |||| |||| |||||||| |||||||||    
T  22736946 acattcaaaatcaattttgattcaaaccatcccaacaacattaactcataa 22736996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 52966945 - 52966895
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||||||| || ||||| |||||||||||||||||||    
T  52966945 acatttaaaatcaattttgattcaacctatctaaacaacatcaactcataa 52966895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 30811288 - 30811329
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  30811288 tacattcaaaatcaattttgatcaaaactatccaaacaacat 30811329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 55087630 - 55087593
Alignment:
Q  299 aatcaattttgatttaaactatccaaacaacatcaact 336  Q
    |||||||||||||| |||||||||||||||||||||||    
T  55087630 aatcaattttgattcaaactatccaaacaacatcaact 55087593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 23207199 - 23207153
Alignment:
Q  294 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||    
T  23207199 ttcaaaattaattttgattcaaactatc-aaacaacatcaactcataa 23207153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 14959684 - 14959734
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||| ||||||| |||  ||| |||||||||||||||||||    
T  14959684 acattcaaaatcaagtttgattcaaatcatctaaacaacatcaactcataa 14959734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 21224943 - 21225001
Alignment:
Q  279 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 337  Q
    |||| ||||| |||| ||| |||||||||||||| |||||||| |||| ||||||||||    
T  21224943 tttggtcattatacactcataatcaattttgattcaaactatcaaaacgacatcaactc 21225001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 33329478 - 33329436
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33329478 tacattcaaaagcaattttgatcgaaactatccaaacaacatc 33329436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 37698519 - 37698485
Alignment:
Q  297 aaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||||||| ||||||||||||||||||    
T  37698519 aaaatcaattttgattcaaactatccaaacaacat 37698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 38340771 - 38340821
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| |||||||||||| ||| |||||||||||||||| |||||| ||||    
T  38340771 acatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataa 38340821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 44610352 - 44610311
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacatc 332  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  44610352 tacattcaaaatcaattttga-tcaaactatccaaacaacatc 44610311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 11264277 - 11264318
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11264277 tacattcaaaagcaattttgataaaaactatccaaacaacat 11264318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 28884258 - 28884299
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  28884258 tacattcaaaaataattttgattaaaactatccaaacaacat 28884299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 39252061 - 39252102
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  39252061 tacattcaaaagcaattttgataaaaactatccaaacaacat 39252102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 42074914 - 42074955
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  42074914 tacattcaaaatcaattttgataagaactatccaaacaacat 42074955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 45423905 - 45423864
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  45423905 tacatccaaaatcaattttgattcaagctatccaaacaacat 45423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 48254015 - 48253974
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  48254015 tacattcaaaagcaattttgataaaaactatccaaacaacat 48253974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 51230284 - 51230325
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||||||| ||||||  ||||||||||||||||||    
T  51230284 tacattcaaaatcaaatttgataaaaactatccaaacaacat 51230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 31084175 - 31084223
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||| ||||| |||||||||||| || ||||| ||||||    
T  31084175 attcaaaatcaattatgattcaaactatccaaataatatcaagtcataa 31084223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 53078323 - 53078363
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  53078323 acatccaaaatcaattttgattcaaactgtccaaacaacat 53078363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 29258 - 29208
Alignment:
Q  291 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  29258 acattcaaaatcaattttgattcaaactatccaaacaacatcaattcataa 29208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 9069 - 9126
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9069 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 2161 - 2120
Alignment:
Q  293 attcaaaatcaattttgatttaaactatccaaacaacatcaa 334  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2161 attcaaaatcaattttgacttaaactatccaaacaacatcaa 2120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 253086 - 253143
Alignment:
Q  284 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 341  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| |||||||||    
T  253086 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataa 253143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 46727 - 46768
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  46727 tacatccaaaatcaattttgatttgaactatccaaacaacat 46768  T

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Target: scaffold0394 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 5967 - 5918
Alignment:
Q  291 acattcaaaatcaattttgatt-----taaactatccaaacaacatcaac 335  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||    
T  5967 acattcaaaatcaattttgattcaaattaaactatccaaacaacatcaac 5918  T

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Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 9295 - 9254
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  9295 tacatttaaaatcaattttgatcaaaactatccaaacaacat 9254  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 32582 - 32541
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  32582 tacattcaaaagcaattttgataaaaactatccaaacaacat 32541  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 301786 - 301745
Alignment:
Q  290 tacattcaaaatcaattttgatttaaactatccaaacaacat 331  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  301786 tacattcaaaaacaattttgatcaaaactatccaaacaacat 301745  T

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Target: scaffold0983 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 2399 - 2359
Alignment:
Q  296 caaaatcaattttgatttaaactatccaaacaacatcaact 336  Q
    ||||||||||||||||| |||||||| ||||||| ||||||    
T  2399 caaaatcaattttgattcaaactatctaaacaacgtcaact 2359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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