View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_17 (Length: 341)
Name: NF18331_low_17
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 42254666 - 42254979
Alignment:
| Q |
18 |
aaattaaagattatgaaaatgatcagagtttggtgaatttaacagtgaatcttccaaatgggacaagtttgtatagaagggctgtttttgtgaatggttc |
117 |
Q |
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| T |
42254666 |
aaattaaagattatgaaaatgatcagagtttggtgaatttaacagtgaatcttccaaatgggacaagtttgtatagaagggctgtttttgtgaatggttc |
42254765 |
T |
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| Q |
118 |
tgttccttccaattatgctgaggatgttttgtgggagacaataactggcatttgtgggaatctagctcagaattgtgttgggatagttgctgacaagttc |
217 |
Q |
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| T |
42254766 |
tgttccttccaattatgctgaggatgttttgtgggagacaataactggcatttgtgggaatctagctcagaattgtgttgggatagttgctgacaagttc |
42254865 |
T |
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| Q |
218 |
aaatctaaggcattgagaaacttggagaatcagaatcattggatggtgaatctctcttgtcagtatcaaggttttaatagtttaatcaaggattttacta |
317 |
Q |
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| T |
42254866 |
aaatctaaggcattgagaaacttggagaatcggaatcattggatggtgaatctctcttgtcagtatcaaggttttaatagtttaatcaaagattttacta |
42254965 |
T |
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| Q |
318 |
aagaacttcctttg |
331 |
Q |
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| T |
42254966 |
aagaacttcctttg |
42254979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 20841969 - 20841858
Alignment:
| Q |
203 |
gttgctgacaagttcaaatctaaggcattgagaaacttggagaatcagaatcattggatggtgaatctctcttgtcagtatcaaggttttaatagtttaa |
302 |
Q |
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|||||||| ||||| || ||||||||||||| || ||||||||||| || ||||||||||| ||| ||||||||| |||||| ||| |||||||| |
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| T |
20841969 |
gttgctgataagtttaaggctaaggcattgaggaatttggagaatcaaaaccattggatggtaaatacttcttgtcagcttcaagggtttgttagtttaa |
20841870 |
T |
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| Q |
303 |
tcaaggatttta |
314 |
Q |
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| T |
20841869 |
tcaaggatttta |
20841858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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