View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_low_19 (Length: 317)

Name: NF18331_low_19
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_low_19
NF18331_low_19
[»] chr4 (1 HSPs)
chr4 (163-302)||(50287223-50287363)
[»] chr8 (5 HSPs)
chr8 (103-157)||(9491953-9492007)
chr8 (106-157)||(1176240-1176291)
chr8 (106-157)||(45294594-45294645)
chr8 (103-157)||(33963509-33963563)
chr8 (103-157)||(33978666-33978720)
[»] chr5 (1 HSPs)
chr5 (103-157)||(8433587-8433641)
[»] chr2 (1 HSPs)
chr2 (107-157)||(35321195-35321246)
[»] chr1 (1 HSPs)
chr1 (106-157)||(12037589-12037640)
[»] chr6 (1 HSPs)
chr6 (103-157)||(11574447-11574501)
[»] chr3 (1 HSPs)
chr3 (109-154)||(19277271-19277316)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 50287223 - 50287363
Alignment:
Q  163 ttagtggtataagatttgattgttgttgtt-ttgatgcttactaagaggaggagttcaaagtaactcatgctttcgtttacttgcgaatattgttgtttt 261  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50287223 ttagtgggataagatttggttgttgttgttgttgatgcttactaagatgaggagttcaaagtaactcatgctttcgtttacttgcgaatattgttgttct 50287322  T
Q  262 ggtcttgtgtttggtatatccaacgtattttccacattgct 302  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  50287323 ggttttgtgtttggtatatccaacgtattttccacattgct 50287363  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 9491953 - 9492007
Alignment:
Q  103 aaatttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  9491953 aaatttgaaggtccagctcagtagagctgtttgcaccccctcaaggacggccctg 9492007  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 1176240 - 1176291
Alignment:
Q  106 tttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||||||| || ||| ||||||||||| ||||||||||||||||||||||    
T  1176240 tttggaggtctagctcagtagagctgtttgcaccccctcaaggacggccctg 1176291  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 45294594 - 45294645
Alignment:
Q  106 tttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||    
T  45294594 tttggaggcccagctcattagagctgtttgcaccccctcaaggacggccctg 45294645  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 33963509 - 33963563
Alignment:
Q  103 aaatttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||||||||| |||  || ||||||||||| ||||||||||||| ||||||||    
T  33963509 aaatttggaggttcagcgcagtagagctgtttgcaccccctcaaggccggccctg 33963563  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 33978666 - 33978720
Alignment:
Q  103 aaatttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||||||||  ||| ||| ||||||||||| ||||||||||||| ||||||||    
T  33978666 aaatttggaggctcagctcagtagagctgtttgcaccccctcaaggccggccctg 33978720  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 8433587 - 8433641
Alignment:
Q  103 aaatttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||    
T  8433587 aaatttggaggcccagctcattagagctgtttgcaccccctcaaggacggccctg 8433641  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 35321195 - 35321246
Alignment:
Q  107 ttggaggtccagttcaatagagctgtttaca-ccccctcaaggacggccctg 157  Q
    ||||||| |||||||| ||||||||||| || ||||||||||||||||||||    
T  35321195 ttggaggcccagttcagtagagctgtttgcacccccctcaaggacggccctg 35321246  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 12037640 - 12037589
Alignment:
Q  106 tttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||    
T  12037640 tttggaggcccagctcagtagagctgtttgcaccccctcaaagacggccctg 12037589  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 11574501 - 11574447
Alignment:
Q  103 aaatttggaggtccagttcaatagagctgtttacaccccctcaaggacggccctg 157  Q
    |||||| |||| |||| ||| ||||||||||| ||||||||||||||||| ||||    
T  11574501 aaattttgaggcccagctcagtagagctgtttgcaccccctcaaggacggtcctg 11574447  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 19277316 - 19277271
Alignment:
Q  109 ggaggtccagttcaatagagctgtttacaccccctcaaggacggcc 154  Q
    ||||||||||||| |||||||||||||||||| || |||| |||||    
T  19277316 ggaggtccagttcgatagagctgtttacacccactaaaggtcggcc 19277271  T

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