View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_21 (Length: 303)
Name: NF18331_low_21
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 39884268 - 39883996
Alignment:
| Q |
33 |
caacctcgattggtggatttcggaggaatttaaaacaacaacttaccgtgaattacagtgtatgatatttcnnnnnnnnttgcactttgatattgtgatt |
132 |
Q |
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| T |
39884268 |
caacctccattggtggattgcggaagaatttaaaacaacaacttaccgtgaattacagtgtatgatatttcaaaaaaaattgcactttgatattgtgatt |
39884169 |
T |
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| Q |
133 |
tttgtcaaattcaccttaactccaaaaaagcaggtaaatgttatacaaagagaatggattctatctttcatatggattgtcatata-------------- |
218 |
Q |
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| T |
39884168 |
tttgtcaaagtcaccttaactccaaaaaagcaggtaaatgttatacaaagagaatggattctatctttcatatggattgtcatatacaactcttgtttat |
39884069 |
T |
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| Q |
219 |
--tattcaataccgatatagaagttagtgaatggttacattattatacttgagcatac-taaccattgattct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39884068 |
tttattcaataccgatatagaagttagtgaatggttacattattatacttgagcatacttaaccattgattct |
39883996 |
T |
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