View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_27 (Length: 280)
Name: NF18331_low_27
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 42232833 - 42232760
Alignment:
| Q |
31 |
tgcatgactttctcattacatccacgcaaatcaaatttctaacggtcttgtgcaacactatacaagcatatttt |
104 |
Q |
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| T |
42232833 |
tgcatcactttctcattacatccacgcaaatcaaatttctaacggtcttgtgcaacactttacaagcatatttt |
42232760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 42232665 - 42232564
Alignment:
| Q |
135 |
atttactgtcatattggttcctatcnnnnnnnttattgtcattattgaaaaactattttgattaatagagtacaccatcaaatattattttgaaatttcg |
234 |
Q |
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| T |
42232665 |
atttaatgtcatatcggttcctatcaaaaaaattattgtcattattgaaaaactattttgattaacagagtatacgatcaaatattattttgaaatttcg |
42232566 |
T |
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| Q |
235 |
at |
236 |
Q |
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|| |
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| T |
42232565 |
at |
42232564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 42232728 - 42232684
Alignment:
| Q |
104 |
taagatgaattttcggtccttcaatataattatttactgtcatat |
148 |
Q |
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| T |
42232728 |
taagatgaatttttggtccttcaatatagttatttactatcatat |
42232684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 34937899 - 34937853
Alignment:
| Q |
186 |
actattttgattaatagagtacaccatcaaatattattttgaaattt |
232 |
Q |
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| T |
34937899 |
actattttgattaacaaagtacacaatcaaaaattattttgaaattt |
34937853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 27223786 - 27223741
Alignment:
| Q |
188 |
tattttgattaatagagtacaccatcaaatattattttgaaatttc |
233 |
Q |
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| T |
27223786 |
tattttgattaacagagtgcacaatcaaatgttattttgaaatttc |
27223741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 257913 - 257868
Alignment:
| Q |
188 |
tattttgattaatagagtacaccatcaaatattattttgaaatttc |
233 |
Q |
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| T |
257913 |
tattttgattaacagagtgcacaatcaaatgttattttgaaatttc |
257868 |
T |
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