View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_29 (Length: 271)
Name: NF18331_low_29
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 8028364 - 8028115
Alignment:
| Q |
9 |
atcataggtcaaaattcaatcggtcgagaaccataatttaatttgccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacg |
108 |
Q |
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| T |
8028364 |
atcataggtcataattcaattggtcgagaaccataatttaattttccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacg |
8028265 |
T |
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| Q |
109 |
atattaaaaaattgagctatagtttattttctagatcatccaaggtatggcctcatccttaacgtaatgctcttcataaggctgaacatatagaatg--t |
206 |
Q |
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| T |
8028264 |
atattaaaaaattgagctatagtttattttctagatcatccaaggtatggcttcatccttaacgtaatgctcttcataaggctgaacatatagaatgtat |
8028165 |
T |
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| Q |
207 |
ataatcaacataaatcatcacccattcatctatatgtaccgggacaataa |
256 |
Q |
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| T |
8028164 |
ataatcaacataaatcatcacccattcatctatatgtaccgggacaataa |
8028115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 8018645 - 8018535
Alignment:
| Q |
131 |
tttattttctagatcatccaaggtatggcctcatccttaacgtaatgctcttcataaggctgaacatatagaatgtataatcaacataaatcatcaccca |
230 |
Q |
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| T |
8018645 |
tttattttctggatcatccaaggtatggcctcatccttagtgtaatgctcttcaaaaggctgaacatatagaatgtataatcaacataaaacatcaccca |
8018546 |
T |
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| Q |
231 |
ttcatctatat |
241 |
Q |
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| T |
8018545 |
ttcatctatat |
8018535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 8018974 - 8018883
Alignment:
| Q |
21 |
aattcaatcggtcgagaaccataatttaatttgccatgacagtttctgcactcacttttaaggcacacagaaaattagaacaaacacgatat |
112 |
Q |
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| T |
8018974 |
aattcaattgatcaagaaccataatttaatttgccatgacagtttctgcactcactttcaaggcacacaacaaattagaacaaacactatat |
8018883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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