View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_3 (Length: 665)
Name: NF18331_low_3
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 16 - 648
Target Start/End: Original strand, 46874686 - 46875317
Alignment:
| Q |
16 |
catgggtgctgcatttttccctgtatgaaatacaggtactggacttgtggataactggagaaccaaactgtattttattcgttgtaagatttatgaaagc |
115 |
Q |
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| T |
46874686 |
catgggtgctgcatttttccctgtatgaaatacaggtactggacttgtggataactggagaaccaaactgtattttattcgttgtaagatttatgaaagc |
46874785 |
T |
|
| Q |
116 |
ttctcaaatgagttcaagactcataaattaatatgtgaagtaagaaattttacattactagagcttctcaatttattagtttctccttgcgtatgtctgt |
215 |
Q |
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| T |
46874786 |
ttctcaaatgagttcaagactcataaattaatatgtgaagtaagaaattttacattactagagcttctcaatttattagtttctccttgcgtatgtctgt |
46874885 |
T |
|
| Q |
216 |
ttcgcaatcaattcagaacacagtttgtggcctggtaaattcattgtgcgttcacagtcgctgtgatatatcatctgttatgtggcaaactatgatgtta |
315 |
Q |
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| T |
46874886 |
ttcgcaatcaattcagaacacagtttgtggcctggtaaattcattgtgcgttcacagtcactgtgatatatcatctgttatgtggcaaactatgatgtta |
46874985 |
T |
|
| Q |
316 |
gttttgcttaatattgttcctgtcaagatgagacaggtttcttggatagtactctagctgttactcctcttcgttctttacagagttgcatacagaggct |
415 |
Q |
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| T |
46874986 |
gttttgcttaatattgttcctgtcaagatgagacaggtttcttggatagtactctagctgttactcctcttcgttctttacagagttgcatacagaggct |
46875085 |
T |
|
| Q |
416 |
tacaaccggtcatttaatcggcttacttaaactatgagctatgttcaatgttcattctcttgctttatttctgtatgtgatgctaaagctttactagtta |
515 |
Q |
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| T |
46875086 |
tacaatcggtcatttaatccacttacttaaactatgagctatgttcaatgttcattctcttgctttatttctgtatgtgatgctaaagctttactagtta |
46875185 |
T |
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| Q |
516 |
tgctttaaagtttaataactattgacctctaagagccaccaacctttttggtcctctcttttaacccttccttgattctcacttgacagttgaaccttgt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875186 |
tgctttaaagtttaataactattgacctctaagagccaccaacctttttggtcctctc-tttaacccttccttgattctcacttgacagttgaaccttgt |
46875284 |
T |
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| Q |
616 |
tgaaaaatcaaaacaaagctaacatgcatgcac |
648 |
Q |
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| T |
46875285 |
tgaaaaatcaaaacaaagctaacatgcatgcac |
46875317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 46892525 - 46892597
Alignment:
| Q |
73 |
gagaaccaaactgtattttattcgttgtaagatttatgaaagcttctcaaatgagttcaagactcataaatta |
145 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
46892525 |
gagaaccaaactgtattttattcatagtaagatttatgaaagcttctcaattgagttctagactcataaatta |
46892597 |
T |
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