View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_34 (Length: 249)
Name: NF18331_low_34
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 32768285 - 32768521
Alignment:
| Q |
12 |
gaaaatacttatgccagtcttggccaataacactcttcaattattactaccccataattaagtacacaaatcattattagaatatgtctaatgttaaaaa |
111 |
Q |
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| T |
32768285 |
gaaaatacttatgccagtcttggccaatagcacttttcaattattactaccccataattaagtacacaaatcattattagaatatgtctaatgttaaaaa |
32768384 |
T |
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| Q |
112 |
caatcgaacagttaaatcaggttaagtctcaaaagtagggttagtgatcattgagacctagatcggtttatggacattcgtaaacacatnnnnnnnncat |
211 |
Q |
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| T |
32768385 |
caatcgaacagttaaatcaggttaagcctcaaaagtagggttagtgatcattgagacctagatcggtttatggacattcgtaaacacat-aaaaaaacat |
32768483 |
T |
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| Q |
212 |
taagggcgtgtttgatctgctaaacatgacataataac |
249 |
Q |
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| T |
32768484 |
taagggtgtgtttgatctgctaaacatgacagaataac |
32768521 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 35948241 - 35948358
Alignment:
| Q |
78 |
caaatcattattagaatatgtctaatgttaaaaacaatcgaacagttaaatcaggttaagtctcaaaagtagggttagtgatcattgagacctagatcgg |
177 |
Q |
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| T |
35948241 |
caaattattattagaatatttctaaagctagtaaaaattgaacaattaaattaggtcaagccccaaaattagagttagtaatcattgaaacttagatcgg |
35948340 |
T |
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| Q |
178 |
tttatggacattcgtaaa |
195 |
Q |
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| T |
35948341 |
tttatgaacattcgtaaa |
35948358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 27127986 - 27128021
Alignment:
| Q |
67 |
aattaagtacacaaatcattattagaatatgtctaa |
102 |
Q |
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| T |
27127986 |
aattaagtacacaaatcattattagaatatttctaa |
27128021 |
T |
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