View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_36 (Length: 247)
Name: NF18331_low_36
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 33225711 - 33225928
Alignment:
| Q |
10 |
aaaatcccagttctttcgatgtaatgaacacgacatcaccgcagcgtgtgtcacgtttagagaccaattgcatcagatactatttgatatgatttatatt |
109 |
Q |
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| T |
33225711 |
aaaatcccagttctttcgatgtaatgaacacgacatcaccgcagcgtgtgtcacgtttagagaccaattgcatcagatactacttgatatgatttatatt |
33225810 |
T |
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| Q |
110 |
ctcttatattcttgttgttgtgtgttactgtttaggattctttttagcttctgacaaaagaagaagaagaagattgttttatatgctaataaaagttgcc |
209 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33225811 |
ctctcatattcttgttgttgtg------tgtttaggattctttttagcttctgacaaaagaagaagaagaagattgttttatatgctaataaaagttgcc |
33225904 |
T |
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| Q |
210 |
gtcaagcttacaatatggttcctt |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
33225905 |
gtcaagcttacaatatggttcctt |
33225928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 33217795 - 33217994
Alignment:
| Q |
28 |
atgtaatgaacacgacatcaccgcagcgtgtgtcacgtttagagaccaattgcatcagatactatttgatatgatttatattctcttatattcttgttgt |
127 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
33217795 |
atgtaataaacacgacatcaccgcagcgtgtgtcacgtttagagaccaattgcatcagatactacttgatatgatttatattctctcatattcttgttgt |
33217894 |
T |
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| Q |
128 |
tgtgtgttactgtttaggattctttttagcttctgacaaaagaagaagaagaagattgttttatatgctaataaaagttgccgtcaagcttacaatatgg |
227 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33217895 |
tgtg------tgtttaggattctttttagcttctgacaaaagaagaagaagaagattgttttatatgctaataaaagttgccgtcaagcttacaatatgg |
33217988 |
T |
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