View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18331_low_5 (Length: 573)
Name: NF18331_low_5
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18331_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Original strand, 43356440 - 43356989
Alignment:
| Q |
11 |
atgaaagggattggtcatttatgctatatgcatctctctccaattttataaaattaggttaaacgatttatagcatgatatattttgactagttttaaat |
110 |
Q |
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| T |
43356440 |
atgaaagggattggtcatttatgctatatgcatctctcgcccattttataaaattaggttaaacgatttatagcatgatatattttgactagttttaaat |
43356539 |
T |
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| Q |
111 |
ttacacaagtcacattaatcacataacatatatcaatcatatagatactttatacaataccatgattgaggcaccaccaaatggtgggtaaagtgtcagt |
210 |
Q |
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| T |
43356540 |
ttacatatgtcacattaatcacataacatatatcaatcatatagatactttatacaataccatgattgaggcaccaccaaatggtgggtaaagtgtcagt |
43356639 |
T |
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| Q |
211 |
cctct--aatatgataaaagatgatggatagtgggtatagctgcttttgcccccacaccatgcagtgatcattcaaaatgacttttgaattttgataaag |
308 |
Q |
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| T |
43356640 |
cctctctaatatgataaaagatgatggatagtgggtatagctgcttttgcccccacaccatgcagtgatcattcaaaatgacttttgaattttgataaag |
43356739 |
T |
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| Q |
309 |
caactcaacacaacaaagcctttcattttctactttatatagtcaatagaaactaaaagagaaaacttatctccaacccaattgatctagctcttaatct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43356740 |
caactcaacacaacaaagcctttcattttctactttatatagtcaatagaaactaaaagagaaaacttatctccaacccaattgatctagctcttaatct |
43356839 |
T |
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| Q |
409 |
atactcacaatcctccatacaagtcattctcaaaacctcgccctctttcttttcctctctatttaagtgtatcgtagcatgtgtagtgtagtagtagtag |
508 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43356840 |
atactcacaatcctccatacaagtcattctcaaatcctcaccctctttcttttcctcactatttaagtgtatcgtagcatgtgtagtgtagtagtagtag |
43356939 |
T |
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| Q |
509 |
cagccatcaattatttttgaaagatatcatgaaaggaatgagaagcaact |
558 |
Q |
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| T |
43356940 |
cagccatcaattatttttgaaagatatcatgaaaggaatgagaagcaact |
43356989 |
T |
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