View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18331_low_7 (Length: 456)

Name: NF18331_low_7
Description: NF18331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18331_low_7
NF18331_low_7
[»] chr1 (3 HSPs)
chr1 (13-269)||(41697788-41698044)
chr1 (13-269)||(41703382-41703638)
chr1 (124-269)||(8017230-8017375)
[»] chr4 (1 HSPs)
chr4 (13-269)||(54078906-54079162)
[»] chr5 (4 HSPs)
chr5 (13-140)||(23556177-23556304)
chr5 (124-269)||(23556019-23556165)
chr5 (124-265)||(9842489-9842630)
chr5 (49-139)||(9842386-9842476)
[»] chr7 (2 HSPs)
chr7 (124-269)||(42434818-42434963)
chr7 (42-139)||(42434708-42434805)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 41698044 - 41697788
Alignment:
Q  13 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41698044 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 41697945  T
Q  113 gagaagaaagtgtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  41697944 gagaagaaagtgtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcaaaaaaataatataaaaaggaaattggatg 41697845  T
Q  213 gtggggtcagccattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41697844 gtggggtcagccattctctcgtgtaattcgtgtggtgcttgtcgcaccatatagcac 41697788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 41703638 - 41703382
Alignment:
Q  13 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703638 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 41703539  T
Q  113 gagaagaaagtgtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  41703538 gagaagaaagtgtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcaaaaaaataatataaaaaggaaattggatg 41703439  T
Q  213 gtggggtcagccattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41703438 gtggggtcagccattctctcgtgtaattcgtgtggtgcttgtcgcaccatatagcac 41703382  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 8017375 - 8017230
Alignment:
Q  124 gtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatggtggggtcagc 223  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  8017375 gtgtgccgtgattgtctcttccatatacttatttatttattcattttaatgttaatatcaaaaaaataatataaaaaggaaattggatggtggggtccgc 8017276  T
Q  224 cattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    |||||||||||| ||||||||||  ||| |||||||||||| ||||    
T  8017275 cattctctcgtgcaattcgtgtggtgctcgtcgcaccatattgcac 8017230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 54078906 - 54079162
Alignment:
Q  13 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54078906 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 54079005  T
Q  113 gagaagaaagtgtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatg 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  54079006 gagaagaaagtgtgtgtcgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcaaaaaaataatataaaaaggaaattggatg 54079105  T
Q  213 gtggggtcagccattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  54079106 gtggggtcagccattctctcgtgtaattcgtgtggtgcttgtcgcaccatatagcac 54079162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 23556304 - 23556177
Alignment:
Q  13 cagagacaacaaggttatggagaaggaagtttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 112  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23556304 cagagacaacaaggttatggagaaggaattttaaaaacggtggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatg 23556205  T
Q  113 gagaagaaagtgtgtgccgtgattgtct 140  Q
    |||||| |||| ||||||||||||||||    
T  23556204 gagaaggaagtttgtgccgtgattgtct 23556177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 23556165 - 23556019
Alignment:
Q  124 gtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnn-taatataaaaaggaaattggatggtggggtcag 222  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  23556165 gtgtgccatgattgtctcttccatatatttgtttatttattcattttaatgttaatataaaaaaaaataatataaaaaggaaattggatggtggggtcag 23556066  T
Q  223 ccattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||    
T  23556065 ccattctctcgtgcaattcgtgtggtgcttgtcgcaccatatagcac 23556019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 9842489 - 9842630
Alignment:
Q  124 gtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatggtggggtcagc 223  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||    
T  9842489 gtgtgccgtgattgtctcttccatatatttatttatttattcattttaatgttattatcaaaaaaataatataaaaaggaaattggatggtggggtcagc 9842588  T
Q  224 cattctctcgtgtaattcgtgtgcagcttgtcgcaccatata 265  Q
    |||||||||||| ||||| ||||  |||||| ||||||||||    
T  9842589 cattctctcgtgcaattcatgtggtgcttgttgcaccatata 9842630  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 9842386 - 9842476
Alignment:
Q  49 acggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatggagaagaaagtgtgtgccgtgattgtc 139  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  9842386 acggcggtgaatgttggtaactgtgagtttgtgttgttgaacaaaatcagaacataaggttatggagaaggaagtttgtgcagtgattgtc 9842476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 42434818 - 42434963
Alignment:
Q  124 gtgtgccgtgattgtctctgccatatatttgtttatttattcattttaatgttaatatcnnnnnnntaatataaaaaggaaattggatggtggggtcagc 223  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||| ||  ||||||     
T  42434818 gtgtgccgtgattgtctcttcaatatatttatttatttattcattttaatgttaatatcaaaaaaataatataaaaaggaaattggatagtttggtcagt 42434917  T
Q  224 cattctctcgtgtaattcgtgtgcagcttgtcgcaccatatagcac 269  Q
    |||||||||||| |||||||| |  |||||||||| ||||||||||    
T  42434918 cattctctcgtgcaattcgtgcggtgcttgtcgcatcatatagcac 42434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 42434708 - 42434805
Alignment:
Q  42 tttgaaaacggcggtgaatgttggtaacggtgagtttgtgttgttgaacaaaatcagaacataaggttatggagaagaaagtgtgtgccgtgattgtc 139  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||  |||| ||||| |||||||||    
T  42434708 tttgaaaacggcggtgaatgttggtaatggtgagtttgtgttgttgaacaaaattagaacataatgttatggagaaagaagtttgtgcagtgattgtc 42434805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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