View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18332_high_13 (Length: 264)
Name: NF18332_high_13
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_high_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 23190474 - 23190731
Alignment:
| Q |
7 |
gcatcacagattcactcattgaagcaagatgagttttagagtgacttcgctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaactt |
106 |
Q |
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| T |
23190474 |
gcatcacagattcactcattgaagcaagatgagttttagagtgacttcgctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaactt |
23190573 |
T |
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| Q |
107 |
gtgtcaatgctactattatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaagataatcattaggagaataaaatttgttagtagt |
206 |
Q |
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| T |
23190574 |
gtgtcaatgctactattatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaatttgttagtagt |
23190673 |
T |
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| Q |
207 |
ttagaaaatttgttaaactttaaattatatgctctataattaaagattttgtatttct |
264 |
Q |
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| T |
23190674 |
ttagaaaattagttaaactttaaattatatgctctataaataaagattttgtatttct |
23190731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 23183098 - 23183358
Alignment:
| Q |
7 |
gcatcacagattcactcattgaagcaagatgagttttagagtgacttcg---ctagttgtaagaatttaatagttacttgtttgggtaacattgaaaaaa |
103 |
Q |
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| T |
23183098 |
gcatcacagattcagtcattgaagcaagatgagttttagagtgacgacgtcactatctgtaagaattgaatacttacttgtttgggtaacattgaacaaa |
23183197 |
T |
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| Q |
104 |
cttgtgtcaatgctactattat---ttctttcctttatctactccaatgttgttttagtaaaatctgtcaaagataatcattaggagaataaaatttgtt |
200 |
Q |
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| T |
23183198 |
cttgtgtcaatgctactattataatttctttcctttatctactccaatgttgttttagtaaaatctgtcaaggataatcattaggagaataaaattagat |
23183297 |
T |
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| Q |
201 |
agtagtttagaaaatttgttaaactttaaattatatgctctataattaaagattttgtatttct |
264 |
Q |
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| T |
23183298 |
agtagtttagaaaattagttaaaatttaa---atatgctctataaataaagattttgtatttct |
23183358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 21179550 - 21179491
Alignment:
| Q |
10 |
tcacagattcactcattgaagcaagatgagttttagagtgacttcgctagttgtaagaatt |
70 |
Q |
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| T |
21179550 |
tcacaaattcactagttgaagcaagatgag-tttagagtgacttcactagttttgagaatt |
21179491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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