View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18332_high_15 (Length: 250)

Name: NF18332_high_15
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18332_high_15
NF18332_high_15
[»] chr5 (7 HSPs)
chr5 (91-233)||(38157412-38157554)
chr5 (91-233)||(27918794-27918936)
chr5 (91-234)||(29425439-29425582)
chr5 (91-224)||(1758301-1758434)
chr5 (91-234)||(29568183-29568326)
chr5 (1-90)||(38157905-38157994)
chr5 (91-234)||(29168398-29168541)
[»] chr3 (1 HSPs)
chr3 (91-233)||(25518628-25518770)
[»] chr4 (4 HSPs)
chr4 (91-234)||(18986243-18986386)
chr4 (91-234)||(27462143-27462286)
chr4 (91-234)||(27482282-27482425)
chr4 (91-234)||(27521149-27521292)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 38157554 - 38157412
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157554 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 38157455  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgacccttt 233  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  38157454 tcctgattagaggcagaggcggcaaaccagttgacgacccttt 38157412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 27918936 - 27918794
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27918936 accattgaatcagattcaggggtggttttttcagcagagttcaaataacaagaaactgcttctttaacctcagaaggatcaataacttcagatatacatc 27918837  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgacccttt 233  Q
    | |||||  |||| |||||||||||| |||| |||||||||||    
T  27918836 tcctgatcggagggagaggcggcaaagcagtcgacgacccttt 27918794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 29425582 - 29425439
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||    
T  29425582 accaatgaatcagattcaggtgtagttttttcagcagagttcaaataacaagaaactgcttctttaaccttataaggatcaataacttcatatatacatc 29425483  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||||    
T  29425482 tactgatcggaggcagaggctgcaaagcagttgacggccctttt 29425439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 1758434 - 1758301
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  1758434 accattgaatcagattcaggggtggttttttcagcagagttcaaataacgagcaactgcttctttaacctcagaaggatcaataacttcagatatacatc 1758335  T
Q  191 tactgattagaggcagaggcggcaaaccagttga 224  Q
    | |||||| ||||||||||| ||||| |||||||    
T  1758334 tcctgattggaggcagaggctgcaaagcagttga 1758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 29568183 - 29568326
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||| ||||||||||||||  ||  |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  29568183 accaatgaatcagattcaggggtggttttttcagcagagttcaaataacgagcaactgcttctttaacctcagaaggatcaataacttcagatatacatc 29568282  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    |||||||  ||||||||||| ||||| ||||||||  |||||||    
T  29568283 tactgatcggaggcagaggctgcaaagcagttgacagccctttt 29568326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38157994 - 38157905
Alignment:
Q  1 tcatcaagaaaccacatagaactaggaattgaccagttcatcagtacctatatagttgtctttgacacaaaaacacttagaaaccatata 90  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157994 tcataaagaaaccacatagaactaggaattgaccagttcatgagtacctatatagttgtctttgacacaaaaacacttagaaaccatata 38157905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 29168541 - 29168398
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  || |||||| |||||||||||||  || ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29168541 accattgaatcagattcaggggtggttctttcagaagagttcaaataaagagcaactgcttctttaaccttagaaggatcaataacttcagatatacatc 29168442  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    |||||||  ||||||||||| ||||| ||||||||  |||||||    
T  29168441 tactgatcggaggcagaggctgcaaagcagttgacagccctttt 29168398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 25518770 - 25518628
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||    
T  25518770 accattgaatcagattcaggggtggttttttcagcagagttcaaataacaagcaactgcttctttaacctccaaaggatcaataacttcagatatacatc 25518671  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgacccttt 233  Q
    | |||||  ||||||||||||||||| |||| |||||||||||    
T  25518670 tcctgatcggaggcagaggcggcaaagcagtcgacgacccttt 25518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 18986386 - 18986243
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    ||||||||||||||||||   ||  |||||||||||||||||||||||| |  ||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  18986386 accattgaatcagattcaagggtggttttttcagcagagttcaaataacgatcaactgcttctttaacatcagacggatcaataacttcagatatacatc 18986287  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    | |||||| ||||||||||| ||||| ||||||||| |||||||    
T  18986286 tcctgattggaggcagaggctgcaaagcagttgacggccctttt 18986243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 27462286 - 27462143
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  27462286 accattgaatcagattcaggggtggttttttcagcacagttcaaataacgagctactgcttctttaacctcagtaggatcaataacttcagatatacatc 27462187  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    | |||||  ||||||||||| ||||| ||||||||| |||||||    
T  27462186 tgctgatcggaggcagaggctgcaaagcagttgacggccctttt 27462143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 27482425 - 27482282
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||  |||| |||||||||||||| |||||| |||||||||||||||||||    
T  27482425 accattgaatcagattcaggggtggttttttcagcacagttcaaataacgagctactgcttctttaacctcagtaggatcgataacttcagatatacatc 27482326  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    | |||||  ||||||||||| ||||| ||||||||| |||||||    
T  27482325 tgctgatcggaggcagaggctgcaaagcagttgacggccctttt 27482282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 27521149 - 27521292
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  |||||| ||||||||||||||||| ||  |||| ||||||||||||| |||||||||||||||||||||||||||    
T  27521149 accattgaatcagattcaggggtggtttttttagcagagttcaaataacgagctactgcttctttaacctcaaaaggatcaataacttcagatatacatc 27521248  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttt 234  Q
    | |||||  ||||| ||||| ||||| ||||||||| |||||||    
T  27521249 tgctgatcggaggctgaggctgcaaagcagttgacggccctttt 27521292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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