View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18332_high_6 (Length: 502)
Name: NF18332_high_6
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Original strand, 48441792 - 48442268
Alignment:
| Q |
11 |
catcatcaaacaaatcatgcacatccccaccaatatcctatgatcatgcatgtctcnnnnnnnatatcctcaaagaatgaacaaaaggagtgtgtactcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48441792 |
catcatcaaacaaatcatgcacatccccaccaatatcctatgatcatgcatgtctctttttttatatcctcaaagaatgaacaaaaggagtatgtactcc |
48441891 |
T |
|
| Q |
111 |
aattcggctaataacatgacaaagaacaaggctccacaaaattttaaaaacatccttgaaggagcaactcatattttggtacttaaagtggttctcatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48441892 |
aattcggctaataacatgacaaagaacaaggctccacaaaattttaaaaacatccttgaaggagcaactcatattttggtacttaaagtggttctcatgt |
48441991 |
T |
|
| Q |
211 |
gtatacaacactaacatccacgttttcaattcagtgcctaatatgtttgcactttatcccttcaagctagcacctc--nnnnnnnnttaggaaataggtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
48441992 |
gtatacaacactaacatccacgttttcaattcagtgcctaatatgtttgcactttatcccttcaagctagcacctcaaaaaaaaaattacgaaataggtc |
48442091 |
T |
|
| Q |
309 |
ttacgaataacattgcattctaaaagggagagtacctatatagcctagacgtctaaaatggaagtacccaattctgaatgggcaagtaccattaagcacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48442092 |
ttacgaataacattgcattctaaaagggagagtacctatatagcctagacgtctaaaatggaagtacccaattcttaatgggcaagtaccattaagcacc |
48442191 |
T |
|
| Q |
409 |
accactggggaagactaagataagtttttggatgtgtgaatatcgtgtttgtattaattaaactttagggctatttg |
485 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48442192 |
accaatggggaagactaagataagtttttggatatgtgaatatcgtgtttgtattaattaaactttagagctatttg |
48442268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University