View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18332_high_8 (Length: 429)

Name: NF18332_high_8
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18332_high_8
NF18332_high_8
[»] chr1 (1 HSPs)
chr1 (326-417)||(13490803-13490894)
[»] chr8 (1 HSPs)
chr8 (1-63)||(19775240-19775305)
[»] chr7 (2 HSPs)
chr7 (336-415)||(12354574-12354653)
chr7 (212-249)||(28696796-28696833)
[»] chr5 (1 HSPs)
chr5 (336-415)||(23147433-23147512)
[»] chr4 (1 HSPs)
chr4 (206-248)||(44294257-44294299)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 326 - 417
Target Start/End: Complemental strand, 13490894 - 13490803
Alignment:
Q  326 ggatgttgttattttaattgaaaccttagttgaaagtaataaaatttctgatttatgttatacaattgggttcgataatcacttctctgttg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490894 ggatgttgttattttaattgaaaccttagttgaaagtaataaaatttctgatttatgttatacaattgggttcgataatcacttctctgttg 13490803  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19775305 - 19775240
Alignment:
Q  1 actaaacttgaatgcatgtgattggaaagaaa--aaaagaaaatt-acattatagtcacaatttac 63  Q
    ||||||||||||||||||||||||||||||||  |||| |||||| ||||||||||| ||||||||    
T  19775305 actaaacttgaatgcatgtgattggaaagaaaagaaaaaaaaattaacattatagtcgcaatttac 19775240  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 12354653 - 12354574
Alignment:
Q  336 attttaattgaaaccttagttgaaagtaataaaatttctgatttatgttatacaattgggttcgataatcacttctctgt 415  Q
    |||||||||||||| || ||||| ||||  |||||||||||| | ||||||| |||||| || || ||||||||||||||    
T  12354653 attttaattgaaactttggttgacagtagcaaaatttctgatctctgttataaaattggttttgaaaatcacttctctgt 12354574  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 28696833 - 28696796
Alignment:
Q  212 ttaaaaagtgtgtgatttagccactaggctattgaacc 249  Q
    |||||||||||||||| | |||||||||||||||||||    
T  28696833 ttaaaaagtgtgtgatcttgccactaggctattgaacc 28696796  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 23147433 - 23147512
Alignment:
Q  336 attttaattgaaaccttagttgaaagtaataaaatttctgatttatgttatacaattgggttcgataatcacttctctgt 415  Q
    |||||||||||||| || ||||| ||||  |||||||||||| | ||||||| |||||| || || ||||||||||||||    
T  23147433 attttaattgaaactttggttgacagtagcaaaatttctgatctctgttataaaattggttttgaaaatcacttctctgt 23147512  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 44294299 - 44294257
Alignment:
Q  206 cacactttaaaaagtgtgtgatttagccactaggctattgaac 248  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  44294299 cacaccttaaaaagtgtgtgatctagccactaggctattgaac 44294257  T

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