View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18332_high_9 (Length: 368)
Name: NF18332_high_9
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 40945132 - 40945483
Alignment:
| Q |
1 |
tgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattctaaca |
100 |
Q |
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| T |
40945132 |
tgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattctaaca |
40945231 |
T |
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| Q |
101 |
acattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcc |
200 |
Q |
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| T |
40945232 |
acattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcc |
40945331 |
T |
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| Q |
201 |
tcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttctgtactcac |
300 |
Q |
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| T |
40945332 |
tcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaacccttcgttcctttgtgtactcac |
40945431 |
T |
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| Q |
301 |
tctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatatt |
352 |
Q |
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| T |
40945432 |
tctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatatt |
40945483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 22776519 - 22776793
Alignment:
| Q |
2 |
gccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggtcatactttgaaagaattctaacaa |
101 |
Q |
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||||||||||| || ||||| || ||||| ||||| |||||||| || || |||||||||||||| || |||| ||||| |||||||||| |||||| | |
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| T |
22776519 |
gccatagcatacgagaaatgtatgttctgaacatgactctcagaggagcttccaacataataaaattgagtatgatcatattttgaaagaactctaacca |
22776618 |
T |
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| Q |
102 |
cattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcct |
201 |
Q |
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|||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||| |||||| ||||| |
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| T |
22776619 |
cattatcaaccataaacacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaaatcct |
22776718 |
T |
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| Q |
202 |
caatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaa |
276 |
Q |
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|| || || || ||||| || ||||| |||||| |||| || |||||| || || ||| ||||||| ||||| |
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| T |
22776719 |
taaagcagatctctgtccctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaa |
22776793 |
T |
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