View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18332_low_1 (Length: 824)
Name: NF18332_low_1
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 31936379 - 31936152
Alignment:
| Q |
18 |
agcagaagtcatgagagaagctggcccatcttttctagtctggccaaatgttctgtattctgcagattgcatggtagcagcatctcttggtgcaatgggt |
117 |
Q |
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| T |
31936379 |
agcagaagtcatgagagaagcaggcccatcttttctagtctggccaaatgttctatattctgcagattgcatggtagcagcatctcttggtgcaatgggt |
31936280 |
T |
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| Q |
118 |
tgtgatgataactcaccagacacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatgatattattgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31936279 |
tgtgatgataactcaccagacacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatgatattattgt |
31936180 |
T |
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| Q |
218 |
taccaaaactgctcttaaaaataagtga |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31936179 |
taccaaaactgctcttaaaaataagtga |
31936152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 611 - 807
Target Start/End: Complemental strand, 31935777 - 31935569
Alignment:
| Q |
611 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaactttttnnnnnnnntaatatactcaactcttata |
710 |
Q |
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| T |
31935777 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaacttttttaaaaaaataatatactcaactcttata |
31935678 |
T |
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| Q |
711 |
gatgtggaaattattatttaccaaatattgtc------------atgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttagatct |
798 |
Q |
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| T |
31935677 |
gatgtggaaaatattatttaccaaatattttccttcaacattgaatgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttaaacct |
31935578 |
T |
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| Q |
799 |
tctattcat |
807 |
Q |
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|||| |||| |
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| T |
31935577 |
tctactcat |
31935569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 380 - 507
Target Start/End: Complemental strand, 31936045 - 31935918
Alignment:
| Q |
380 |
acaaccgcatgttcgaatagcgacaggtggagaatacatggcaggttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
479 |
Q |
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| T |
31936045 |
acaaccgcatgttcaaatagcgacaggtggagaatacatggcaagttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
31935946 |
T |
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| Q |
480 |
attcgttgatacaatatagtatagtatc |
507 |
Q |
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| T |
31935945 |
attcgttgatacaatatagtatcgtatc |
31935918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 31933405 - 31933215
Alignment:
| Q |
18 |
agcagaagtcatgagagaagctggcccatcttttctagtctggccaaatgttctgtattctgcagattgcatggtagcagcatctcttggtgcaatgggt |
117 |
Q |
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||||||||||||||| ||||| ||||||||||||| || ||| | |||||||| | |||||| ||||||||||| |||||||||||||||||||| || |
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| T |
31933405 |
agcagaagtcatgagtgaagcaggcccatcttttcgagcatggtccaatgttctatcttctgctgattgcatggttgcagcatctcttggtgcaataggc |
31933306 |
T |
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| Q |
118 |
tgtgatgataactcaccagacacattgaacacatcaccgtattttattggttcttgctcatgtctccttggttgttcctgactcatgatga |
208 |
Q |
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| T |
31933305 |
tgtgatgataaatcaccagacacgttgaatatatcaccgtattttattggttcttgctcaggtcttcgtggcttctcttgactcatgatga |
31933215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 31936114 - 31936044
Alignment:
| Q |
285 |
ttaggagtgaaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
355 |
Q |
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| T |
31936114 |
ttaggagtgaaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
31936044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 31932884 - 31932837
Alignment:
| Q |
460 |
atgcattgagaaaaagagtgattcgttgatacaatatagtatagtatc |
507 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
31932884 |
atgcattgagaaagagagtgattcattgatacaatatagtatagtatc |
31932837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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