View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18332_low_10 (Length: 304)

Name: NF18332_low_10
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18332_low_10
NF18332_low_10
[»] chr4 (1 HSPs)
chr4 (8-304)||(11118694-11118991)
[»] chr5 (5 HSPs)
chr5 (14-290)||(42124069-42124346)
chr5 (10-50)||(34232058-34232098)
chr5 (5-50)||(34239805-34239850)
chr5 (14-61)||(41445148-41445195)
chr5 (14-58)||(41432340-41432384)
[»] chr6 (2 HSPs)
chr6 (234-276)||(25522500-25522542)
chr6 (82-132)||(25522347-25522397)
[»] chr3 (1 HSPs)
chr3 (8-49)||(8523841-8523882)
[»] chr2 (2 HSPs)
chr2 (85-159)||(32681369-32681443)
chr2 (8-65)||(12249269-12249326)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 11118991 - 11118694
Alignment:
Q  8 actagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttgatgtactggaaattttatccctttcaaggaatagtcag 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  11118991 actagatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcag 11118892  T
Q  108 ttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgattgagtttcacaacttacaag 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||  ||||| || ||||||||||||||||    
T  11118891 ttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaacttgatcgaatttcacaacttacaag 11118792  T
Q  207 gagatttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaataatttttggcaatctgtg 304  Q
    |||| || ||| |||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  11118791 gagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtttcttggaaatatttattggcaatctgtg 11118694  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 42124346 - 42124069
Alignment:
Q  14 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaatttg-atgtactggaaattttatccctttcaaggaatagtcagttgtc 112  Q
    |||||| || ||| |||||||||||  |||||||||| |||||||||||||| ||  |||| || ||||| |||||||||||| |||||||||| || ||    
T  42124346 tctatcttcgaacgacttgagtggtcttgtcaattttcaactcttctccaaacttacatgt-ctagaaatgttatccctttcatggaatagtcaattatc 42124248  T
Q  113 actaaaattcgaatccaatgacacttatagttttactaacctacaaatactgaaattat-ttctgtcatattgattgagtttcacaacttacaaggagat 211  Q
     ||||| || |||||||||| || |||||||||| ||| ||||||| || || |||| | ||||||||  |||||  | || || || |||||||||||     
T  42124247 tctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaattccataatttacaaggagaa 42124148  T
Q  212 ttcccacgtttgcaacatctgcatctttccaataacaaacttaatggaagaatgcccaattggtttcttggaaataatt 290  Q
    |||  |  ||||  |   ||  || ||||  ||||||||||| |||||||||||||||||||||| |||| ||| ||||    
T  42124147 ttcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttgaaaaaaatt 42124069  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 34232058 - 34232098
Alignment:
Q  10 tagatctatcatcaaacaacttgagtggtgctgtcaatttt 50  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  34232058 tagatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 34239805 - 34239850
Alignment:
Q  5 tacactagatctatcatcaaacaacttgagtggtgctgtcaatttt 50  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||    
T  34239805 tacactatgtctatcatcaaacaacttgagtggtgttgtcaatttt 34239850  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  14 tctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctc 61  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 41432384 - 41432340
Alignment:
Q  14 tctatcatcaaacaacttgagtggtgctgtcaattttaaactctt 58  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||    
T  41432384 tctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 25522500 - 25522542
Alignment:
Q  234 atctttccaataacaaacttaatggaagaatgcccaattggtt 276  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  25522500 atctttccaataacaaacttgatggaagaatgcccaattggtt 25522542  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 25522347 - 25522397
Alignment:
Q  82 ttttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatg 132  Q
    |||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  25522347 ttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatg 25522397  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 8523882 - 8523841
Alignment:
Q  8 actagatctatcatcaaacaacttgagtggtgctgtcaattt 49  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  8523882 actagatctatcatcaaacaacttgagtggtgttgtcaattt 8523841  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 32681369 - 32681443
Alignment:
Q  85 tatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgacacttatagttttactaacctacaaa 159  Q
    |||| |||||| |||||||||| ||||||||||| || |||||||||| || ||||| |||| || |||||||||    
T  32681369 tatctctttcatggaatagtcaattgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaa 32681443  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 12249326 - 12249269
Alignment:
Q  8 actagatctatcatcaaacaacttgagtggtgctgtcaattttaaactcttctccaaa 65  Q
    ||||||| |||||||||||||||||||||||| |||  ||||| ||||||| ||||||    
T  12249326 actagatttatcatcaaacaacttgagtggtgttgttgattttcaactcttttccaaa 12249269  T

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