View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18332_low_3 (Length: 576)
Name: NF18332_low_3
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 51124735 - 51124221
Alignment:
| Q |
1 |
tcatatatattgtcattttgttgcacgagtgaacccaggctagcaagtagctacaaaatcatccagaccttaaaatgtgggcactcgagtggggcaatca |
100 |
Q |
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| T |
51124735 |
tcatacatattgtcattttgttgcacgagtgaacccaggctagcaagtagctacaaaatcatccagaccttaaaatgtgggcactcgagtggggcaatca |
51124636 |
T |
|
| Q |
101 |
attattgctattcaattgaatttaaagtacagcacaagtccagcattattgnnnnnnn-gttgaatcaaactagaacctcatttatactatctaagtttt |
199 |
Q |
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| T |
51124635 |
attattgctattcaattgaattttaagtacagcacaattccagcattattgttttttttgttgaatcaaactagaacctcatttatactatctaagtctt |
51124536 |
T |
|
| Q |
200 |
ccaacattattggcattggattgagttgagcattctcaaacgtgccacgtaaattcatagattaattcgtacctagagaggagataattttcaaatttaa |
299 |
Q |
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| T |
51124535 |
ccaacattattggcattggattgagttgagcattctcaaacgtgccacgtaaattcatagattaattcgtacctagagaggagataattttcaaatttaa |
51124436 |
T |
|
| Q |
300 |
taaaataaataaatatggataaaggttggtgatttgaaacatgagagagaagcatgaatggatccattttcgtgcaaatataattactcaatctgaatag |
399 |
Q |
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| T |
51124435 |
taaaaaaaataaatatggataaaggttggtgatttgaaac-------------atgaatggatccattttcgtgcaaatataattactcaatctgtatag |
51124349 |
T |
|
| Q |
400 |
aattataatggacaattgtttagactaatcgatacatttttaaagttaaatttgacctcgtgatcatatcttatgctaaaagatagttggaccatcaatt |
499 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
51124348 |
aattacaatggacaattgtttagactaatcgatacatttttaaagttgaatttgaactcgtgatcacatcttatgctaaaagatagttggatcatcaatt |
51124249 |
T |
|
| Q |
500 |
catatccaaactattgggtgaaaggatc |
527 |
Q |
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|||||||||||| |||| |||||||||| |
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| T |
51124248 |
catatccaaactcttggatgaaaggatc |
51124221 |
T |
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