View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18332_low_4 (Length: 537)
Name: NF18332_low_4
Description: NF18332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18332_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Original strand, 42875306 - 42875815
Alignment:
| Q |
18 |
ccgagaaacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaaaatgtttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875306 |
ccgagaaacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaaaatgtttg |
42875405 |
T |
|
| Q |
118 |
ccctccccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaaaagcgaagcccttcggaattttcataacaatgtgattcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875406 |
ccctccccatgaaatacagctttccacagtatgaaaaactcagaagccaatgaggagcaaaagcgaagcccttcggaattttcataacaatgtgattcca |
42875505 |
T |
|
| Q |
218 |
ttgcccagtctttgaggagaaaacatcaactttgagctcggacatccttactaaaaaggacttgatgatcacaactcgaaaattgtgtttatttgaacga |
317 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875506 |
ttgccctgtctttgaggagaaaacatcaactttgatctcggacacccttactaaaaaggacttgatgatcacaactcgaaaattgtgtttatttgaacga |
42875605 |
T |
|
| Q |
318 |
cgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcatataaattttcgatacacgtcaaaggaggagaaggatcaggtatatcgatacgcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875606 |
cgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcgtataaattttcgatacacgtcaaaggaggagaaggatcaggtatatcgatacgcc |
42875705 |
T |
|
| Q |
418 |
ctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcatatgctgctgcc |
517 |
Q |
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| T |
42875706 |
ctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcatatgctgctgcc |
42875805 |
T |
|
| Q |
518 |
tttacctttg |
527 |
Q |
| |
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|||||||||| |
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| T |
42875806 |
tttacctttg |
42875815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 511
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
397 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
496 |
Q |
| |
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|||||||||||| ||||| | |||| || || |||||||||||||||||| || || || |||||| ||| || ||| ||||||||||||| || ||||| |
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| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
|
| Q |
497 |
acaaccgcatatgct |
511 |
Q |
| |
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|||||| |||||||| |
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| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 1049883 - 1050034
Alignment:
| Q |
92 |
ataaggatcaaacacaaaaatgtttgccctccccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaaaagcgaagcccttc |
191 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||| || | | |
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| T |
1049883 |
ataaggatcaaacacaaaaatgcttgtcctccccatgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaatccatcc |
1049982 |
T |
|
| Q |
192 |
ggaattttcataacaatgtgattccattgcccagtctttgaggagaaaacat |
243 |
Q |
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||||| ||||||||| | | |||||| ||| |||| |||||||||||||| |
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| T |
1049983 |
ggaataatcataacaacgcgtttccatgaccccgtctctgaggagaaaacat |
1050034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
419 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
507 |
Q |
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||||| ||| ||||| |||| ||||||| || ||||||| ||||| || || ||||||||||||||||| ||||||||||||||||||| |
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| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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